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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = GTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320605 (11 seq.)
>WENV180318799
OBKM01011297
[OBKM] metagenome; water
1316
1391
+
Asp
GTC
[ENA]
¢þ
>WENV180318853
OBKM01018863
[OBKM] metagenome; water
125
50
-
Asp
GTC
[ENA]
¢þ
>WENV170681097
LFFM01000059
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
463
388
-
Asp
GTC
[ENA]
¢þ
>PL191000837
CP031152
Euryarchaeota
Haloplanus sp. CBA1113 plasmid:pCBA1113-02 (CP031152)
8574
8649
+
Asp
GTC
[ENA]
¡û
>W1910006716
BBJO01000043
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
11002
10927
-
Asp
GTC
[ENA]
¡û
>W1910226890
FNFC01000035
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
5019
5094
+
Asp
GTC
[ENA]
¡û
>W1910228488
FNPC01000012
Euryarchaeota
Halopenitus persicus DC30,IBRC 10041,KCTC 4046 [FNPC]
55830
55905
+
Asp
GTC
[ENA]
¡û
>W1910912522
NHPJ01000114
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
66311
66236
-
Asp
GTC
[ENA]
¡û
>W1911709762
QPLT01000181
Euryarchaeota
Halorubrum sp. Atlit-26R [QPLT]
223
148
-
Asp
GTC
[ENA]
¡û
>W1911770052
QXIK01000012
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
91149
91224
+
Asp
GTC
[ENA]
¡û
>W1610682559
LKND01000005
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
463
388
-
Asp
GTC
[ENA]
¡û
Identical group No.438733 (1 seq.)
>PL191001460
CP040331
Euryarchaeota
Natrinema versiforme BOL5-4 plasmid:pNVE500 (CP040331)
25834
25759
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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