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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = TCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780384 (70 seq.)
>A171001120
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
1114288
1114358
+
Gly
TCC
-
¡û
>A171001304
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
3344774
3344845
+
Gly
TCC
-
¡û
>A171002458
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
3038741
3038811
+
Gly
TCC
-
¡û
>A171003072
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
2742567
2742497
-
Gly
TCC
-
¡û
>A171003120
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
727513
727443
-
Gly
TCC
-
¡û
>A171003167
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
2794514
2794584
+
Gly
TCC
-
¡û
>A171003502
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
991780
991710
-
Gly
TCC
-
¡û
>A171004131
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
970563
970633
+
Gly
TCC
-
¡û
>A171006928
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
4088984
4089054
+
Gly
TCC
-
¡û
>A171006950
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
654254
654324
+
Gly
TCC
-
¡û
>WENV170680290
LFCJ01007222
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
7957
7886
-
Gly
TCC
[ENA]
¢þ
>WENV170702114
LKMJ01000540
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
87
157
+
Gly
TCC
[ENA]
¢þ
>WENV170702346
LKMJ01001450
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7981
8052
+
Gly
TCC
[ENA]
¢þ
>WENV170703663
LKMJ01015100
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2574
2504
-
Gly
TCC
[ENA]
¢þ
>WENV170704193
LKMJ01024804
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1863
1793
-
Gly
TCC
[ENA]
¢þ
>PL191000886
CP031306
Euryarchaeota
Natronorubrum bangense JCM 10635 plasmid:unnamed1 (CP031306)
823337
823266
-
Gly
TCC
[ENA]
¡û
>W1910226676
FMZP01000002
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
152621
152691
+
Gly
TCC
[ENA]
¡û
>W1910227133
FNLC01000001
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
530928
530858
-
Gly
TCC
[ENA]
¡û
>W1910229311
FNWL01000001
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
421675
421604
-
Gly
TCC
[ENA]
¡û
>W1910229802
FOFD01000002
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
882011
881940
-
Gly
TCC
[ENA]
¡û
>W1910229877
FOIC01000001
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
173639
173709
+
Gly
TCC
[ENA]
¡û
>W1910230234
FOKW01000001
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
702763
702693
-
Gly
TCC
[ENA]
¡û
>W1910230450
FORO01000017
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
4785
4715
-
Gly
TCC
[ENA]
¡û
>W1910230861
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
623498
623428
-
Gly
TCC
[ENA]
¡û
>W1910340491
FTNP01000001
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
398033
397963
-
Gly
TCC
[ENA]
¡û
>W1910340533
FTNR01000002
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
40284
40354
+
Gly
TCC
[ENA]
¡û
>W1910568495
JDTG01000005
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
91664
91593
-
Gly
TCC
[ENA]
¡û
>W1910569079
JHUT02000008
Euryarchaeota
Natrinema mahii H13 [JHUT]
139078
139148
+
Gly
TCC
[ENA]
¡û
>W1910572717
JNCS01000006
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
157381
157311
-
Gly
TCC
[ENA]
¡û
>W1910583007
JXAN01000023
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
5108
5178
+
Gly
TCC
[ENA]
¡û
>W1910646138
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
2229605
2229534
-
Gly
TCC
[ENA]
¡û
>W1910657573
MASN01000035
Euryarchaeota
Natrialba sp. SSL1 [MASN]
220090
220020
-
Gly
TCC
[ENA]
¡û
>W1910826102
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
833561
833491
-
Gly
TCC
[ENA]
¡û
>W1911434010
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
455405
455335
-
Gly
TCC
[ENA]
¡û
>W1911572206
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
556684
556754
+
Gly
TCC
[ENA]
¡û
>W1911591334
PKKI01000016
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
4652
4582
-
Gly
TCC
[ENA]
¡û
>W1911717988
QQTY01000002
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
489848
489919
+
Gly
TCC
[ENA]
¡û
>W1610001063
ACIT01000004
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
41679
41750
+
Gly
TCC
[ENA]
¡û
>W1610004076
AGIM01000002
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
70064
70134
+
Gly
TCC
[ENA]
¡û
>W1610004123
AGIN01000002
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
38038
37968
-
Gly
TCC
[ENA]
¡û
>W1610005381
AJVG01000014
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
11298
11368
+
Gly
TCC
[ENA]
¡û
>W1610011733
AOHS01000044
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
54613
54542
-
Gly
TCC
[ENA]
¡û
>W1610011910
AOHW01000023
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
149203
149133
-
Gly
TCC
[ENA]
¡û
>W1610011963
AOHX01000041
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
16254
16183
-
Gly
TCC
[ENA]
¡û
>W1610012015
AOHY01000058
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
142575
142646
+
Gly
TCC
[ENA]
¡û
>W1610012021
AOHZ01000015
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
8603
8673
+
Gly
TCC
[ENA]
¡û
>W1610012098
AOIA01000158
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
2550
2620
+
Gly
TCC
[ENA]
¡û
>W1610012136
AOIB01000025
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
20245
20315
+
Gly
TCC
[ENA]
¡û
>W1610012189
AOIC01000123
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
29071
29141
+
Gly
TCC
[ENA]
¡û
>W1610012195
AOID01000007
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
13100
13171
+
Gly
TCC
[ENA]
¡û
>W1610012255
AOIE01000076
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
156558
156488
-
Gly
TCC
[ENA]
¡û
>W1610012298
AOII01000046
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
63409
63339
-
Gly
TCC
[ENA]
¡û
>W1610012363
AOIJ01000085
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
10942
11012
+
Gly
TCC
[ENA]
¡û
>W1610012371
AOIK01000006
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
7900
7970
+
Gly
TCC
[ENA]
¡û
>W1610012453
AOIL01000069
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
6379
6309
-
Gly
TCC
[ENA]
¡û
>W1610012491
AOIM01000041
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
185475
185545
+
Gly
TCC
[ENA]
¡û
>W1610012511
AOIN01000055
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
45454
45524
+
Gly
TCC
[ENA]
¡û
>W1610012561
AOIO01000030
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
113984
113914
-
Gly
TCC
[ENA]
¡û
>W1610012589
AOIP01000012
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
6349
6279
-
Gly
TCC
[ENA]
¡û
>W1610012672
AOIR01000046
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
36324
36253
-
Gly
TCC
[ENA]
¡û
>W1610012704
AOIS01000010
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
121937
122007
+
Gly
TCC
[ENA]
¡û
>W1610012765
AOIT01000017
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
10745
10815
+
Gly
TCC
[ENA]
¡û
>W1610014409
AOLZ01000022
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
55017
54947
-
Gly
TCC
[ENA]
¡û
>W1610014463
AOMA01000078
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
63563
63492
-
Gly
TCC
[ENA]
¡û
>W1610019005
ARPH01000002
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
352179
352249
+
Gly
TCC
[ENA]
¡û
>W1610046849
BBCV01000022
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
1620
1550
-
Gly
TCC
[ENA]
¡û
>W1610082995
CBMA010000048
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
124773
124844
+
Gly
TCC
[ENA]
¡û
>W1610083007
CBMB010000001
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
180554
180484
-
Gly
TCC
[ENA]
¡û
>W1610671370
LKCV01000054
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
29172
29102
-
Gly
TCC
[ENA]
¡û
>W1610682145
LKMK01000148
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
7957
7886
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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