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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = TCG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251444 (6 seq.)
>WENV180318984
OBKM01124373
[OBKM] metagenome; water
24
103
+
Arg
TCG
[ENA]
¢þ
>PL191001468
CP040331
Euryarchaeota
Natrinema versiforme BOL5-4 plasmid:pNVE500 (CP040331)
23196
23117
-
Arg
TCG
[ENA]
¡û
>W1910006765
BBJP01000025
Euryarchaeota
Halorubrum halophilum B8 [BBJP]
13996
14075
+
Arg
TCG
[ENA]
¡û
>W1910226887
FNFC01000032
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
7196
7117
-
Arg
TCG
[ENA]
¡û
>W1910230275
FOKW01000014
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
15393
15314
-
Arg
TCG
[ENA]
¡û
>W1910575020
JQKV01000005
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
183382
183461
+
Arg
TCG
[ENA]
¡û
Identical group No.254329 (2 seq.)
>PL191000891
CP031306
Euryarchaeota
Natronorubrum bangense JCM 10635 plasmid:unnamed1 (CP031306)
52131
52056
-
Arg
TCG
[ENA]
¡û
>W1610012014
AOHY01000058
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
86084
86159
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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