This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = TGC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655453 (105 seq.)
>A171001115
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
515091
515164
+
Ala
TGC
-
¡û
>A171001126
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
1945604
1945677
+
Ala
TGC
-
¡û
>A171001138
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
3693783
3693710
-
Ala
TGC
-
¡û
>A171001165
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
1747445
1747516
+
Ala
TGC
-
¡û
>A171001174
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
2840053
2839982
-
Ala
TGC
-
¡û
>A171001389
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
1599762
1599833
+
Ala
TGC
-
¡û
>A171001404
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
2770065
2769994
-
Ala
TGC
-
¡û
>A171003036
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
226519
226592
+
Ala
TGC
-
¡û
>A171003068
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
3342439
3342366
-
Ala
TGC
-
¡û
>A171003074
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
2199494
2199421
-
Ala
TGC
-
¡û
>A171003178
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
2542878
2542805
-
Ala
TGC
-
¡û
>A171003193
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
442
369
-
Ala
TGC
-
¡û
>A171004136
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
1412982
1413055
+
Ala
TGC
-
¡û
>A171004147
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
2554953
2554880
-
Ala
TGC
-
¡û
>A171006200
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
1619882
1619953
+
Ala
TGC
-
¡û
>A171006214
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
2862072
2862001
-
Ala
TGC
-
¡û
>A171006954
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
1053717
1053790
+
Ala
TGC
-
¡û
>A171006971
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2667194
2667121
-
Ala
TGC
-
¡û
>PL191000882
CP031304
Euryarchaeota
Haloterrigena jeotgali A29 plasmid:unnamed6 (CP031304)
669765
669692
-
Ala
TGC
[ENA]
¡û
>PL191000892
CP031309
Euryarchaeota
Natronorubrum bangense JCM 10635 plasmid:unnamed4 (CP031309)
29376
29449
+
Ala
TGC
[ENA]
¡û
>PL191000893
CP031309
Euryarchaeota
Natronorubrum bangense JCM 10635 plasmid:unnamed4 (CP031309)
111388
111315
-
Ala
TGC
[ENA]
¡û
>W1910186211
CCDK010000001
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
2060
2131
+
Ala
TGC
[ENA]
¡û
>W1910186237
CCDK010000002
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
517627
517556
-
Ala
TGC
[ENA]
¡û
>W1910186260
CCDK010000006
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
13872
13943
+
Ala
TGC
[ENA]
¡û
>W1910193559
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
382199
382128
-
Ala
TGC
[ENA]
¡û
>W1910229316
FNWL01000001
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
3476
3403
-
Ala
TGC
[ENA]
¡û
>W1910229317
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
1878
1951
+
Ala
TGC
[ENA]
¡û
>W1910229335
FNWL01000003
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
1878
1951
+
Ala
TGC
[ENA]
¡û
>W1910229347
FNWL01000004
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
3476
3403
-
Ala
TGC
[ENA]
¡û
>W1910229646
FOAD01000018
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
1816
1887
+
Ala
TGC
[ENA]
¡û
>W1910230831
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
1497085
1497158
+
Ala
TGC
[ENA]
¡û
>W1910230846
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
1690
1617
-
Ala
TGC
[ENA]
¡û
>W1910340523
FTNP01000012
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
3476
3403
-
Ala
TGC
[ENA]
¡û
>W1910340568
FTNR01000046
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
3410
3337
-
Ala
TGC
[ENA]
¡û
>W1910568510
JDTG01000011
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
10385
10458
+
Ala
TGC
[ENA]
¡û
>W1910569065
JHUT02000003
Euryarchaeota
Natrinema mahii H13 [JHUT]
396230
396303
+
Ala
TGC
[ENA]
¡û
>W1910569085
JHUT02000014
Euryarchaeota
Natrinema mahii H13 [JHUT]
1792
1865
+
Ala
TGC
[ENA]
¡û
>W1910572581
JMIP02000023
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
35511
35438
-
Ala
TGC
[ENA]
¡û
>W1910572735
JNCS01000019
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
1783
1856
+
Ala
TGC
[ENA]
¡û
>W1910573487
JPES01000081
Euryarchaeota
Haloferax sp. ATB1 [JPES]
12174
12103
-
Ala
TGC
[ENA]
¡û
>W1910583032
JXAN01000167
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
350
277
-
Ala
TGC
[ENA]
¡û
>W1910646104
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
11858
11931
+
Ala
TGC
[ENA]
¡û
>W1910646128
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
3466275
3466348
+
Ala
TGC
[ENA]
¡û
>W1910646134
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
2804992
2804919
-
Ala
TGC
[ENA]
¡û
>W1910646140
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
1718549
1718476
-
Ala
TGC
[ENA]
¡û
>W1910646150
LWLN01000002
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
259878
259951
+
Ala
TGC
[ENA]
¡û
>W1910696303
MEIH01000371
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
1107
1036
-
Ala
TGC
[ENA]
¡û
>W1911433972
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
1298067
1298140
+
Ala
TGC
[ENA]
¡û
>W1911433985
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
3731157
3731230
+
Ala
TGC
[ENA]
¡û
>W1911433994
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2739127
2739054
-
Ala
TGC
[ENA]
¡û
>W1911493169
OBEJ01000011
Euryarchaeota
Natronoarchaeum philippinense DSM 27208 [OBEJ]
3550
3477
-
Ala
TGC
[ENA]
¡û
>W1911572214
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
1760017
1760090
+
Ala
TGC
[ENA]
¡û
>W1911572225
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
3912626
3912553
-
Ala
TGC
[ENA]
¡û
>W1911572240
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
981513
981440
-
Ala
TGC
[ENA]
¡û
>W1911629798
PSYS01000008
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
1983
2054
+
Ala
TGC
[ENA]
¡û
>W1911629847
PSYT01000007
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
1988
2059
+
Ala
TGC
[ENA]
¡û
>W1911629897
PSYU01000010
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
3514
3443
-
Ala
TGC
[ENA]
¡û
>W1911629948
PSYV01000009
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
1810
1881
+
Ala
TGC
[ENA]
¡û
>W1911629998
PSYW01000011
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
2035
2106
+
Ala
TGC
[ENA]
¡û
>W1911630048
PSYX01000017
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
1810
1881
+
Ala
TGC
[ENA]
¡û
>W1911630097
PSYY01000022
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
2036
2107
+
Ala
TGC
[ENA]
¡û
>W1911655715
QEQI01000009
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
1983
2054
+
Ala
TGC
[ENA]
¡û
>W1911655768
QEQJ01000011
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
2036
2107
+
Ala
TGC
[ENA]
¡û
>W1911709526
QPLO01000006
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
1988
2059
+
Ala
TGC
[ENA]
¡û
>W1911709575
QPLP01000008
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
1988
2059
+
Ala
TGC
[ENA]
¡û
>W1911717802
QQRR01000006
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
3565
3491
-
Ala
TGC
[ENA]
¡û
>W1911718012
QQTY01000008
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
3480
3407
-
Ala
TGC
[ENA]
¡û
>W1610002996
AEMG01000031
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
129
58
-
Ala
TGC
[ENA]
¡û
>W1610004138
AGIN01000011
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
311
384
+
Ala
TGC
[ENA]
¡û
>W1610011538
ANPG01000769
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
565
494
-
Ala
TGC
[ENA]
¡û
>W1610011837
AOHU01000104
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
40407
40336
-
Ala
TGC
[ENA]
¡û
>W1610011892
AOHW01000002
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
85013
85088
+
Ala
TGC
[ENA]
¡û
>W1610011969
AOHX01000046
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
2474
2401
-
Ala
TGC
[ENA]
¡û
>W1610011997
AOHY01000010
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
655
582
-
Ala
TGC
[ENA]
¡û
>W1610012232
AOID01000070
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
990
1063
+
Ala
TGC
[ENA]
¡û
>W1610012242
AOIE01000015
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
128
55
-
Ala
TGC
[ENA]
¡û
>W1610012318
AOII01000104
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
606
533
-
Ala
TGC
[ENA]
¡û
>W1610012319
AOII01000104
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
283
210
-
Ala
TGC
[ENA]
¡û
>W1610012343
AOIJ01000050
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
580
507
-
Ala
TGC
[ENA]
¡û
>W1610012408
AOIK01000040
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
17
90
+
Ala
TGC
[ENA]
¡û
>W1610012664
AOIR01000029
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
69
142
+
Ala
TGC
[ENA]
¡û
>W1610012719
AOIS01000019
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
68488
68563
+
Ala
TGC
[ENA]
¡û
>W1610012720
AOIS01000020
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
148
223
+
Ala
TGC
[ENA]
¡û
>W1610013450
AOLD01000003
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
44
115
+
Ala
TGC
[ENA]
¡û
>W1610013550
AOLE01000027
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
44
115
+
Ala
TGC
[ENA]
¡û
>W1610013582
AOLF01000030
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
587
516
-
Ala
TGC
[ENA]
¡û
>W1610013628
AOLG01000044
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
1073
1144
+
Ala
TGC
[ENA]
¡û
>W1610013698
AOLH01000027
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
63697
63768
+
Ala
TGC
[ENA]
¡û
>W1610013733
AOLI01000021
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
192
121
-
Ala
TGC
[ENA]
¡û
>W1610013768
AOLJ01000012
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
100036
100107
+
Ala
TGC
[ENA]
¡û
>W1610013830
AOLK01000021
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
169
240
+
Ala
TGC
[ENA]
¡û
>W1610013853
AOLK01000025
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
85
14
-
Ala
TGC
[ENA]
¡û
>W1610013884
AOLL01000014
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
74459
74530
+
Ala
TGC
[ENA]
¡û
>W1610013926
AOLM01000015
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
2036
2107
+
Ala
TGC
[ENA]
¡û
>W1610013988
AOLN01000016
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
1983
2054
+
Ala
TGC
[ENA]
¡û
>W1610014032
AOLO01000008
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
2037
2108
+
Ala
TGC
[ENA]
¡û
>W1610014084
AOLP01000013
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
2025
2096
+
Ala
TGC
[ENA]
¡û
>W1610018842
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
2130334
2130405
+
Ala
TGC
[ENA]
¡û
>W1610019003
ARPH01000001
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
743
668
-
Ala
TGC
[ENA]
¡û
>W1610019012
ARPH01000003
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
1224
1149
-
Ala
TGC
[ENA]
¡û
>W1610019018
ARPH01000004
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
626977
627052
+
Ala
TGC
[ENA]
¡û
>W1610784320
LOEP01000048
Euryarchaeota
Haloferax sp. Q22 [LOEP]
1232
1161
-
Ala
TGC
[ENA]
¡û
>W1610799776
LOPU01000006
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
504
578
+
Ala
TGC
[ENA]
¡û
>W1610799822
LOPV01000001
Euryarchaeota
Haloferax profundi SB29 [LOPV]
2034
2105
+
Ala
TGC
[ENA]
¡û
>W1610799868
LOPW01000007
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
587
516
-
Ala
TGC
[ENA]
¡û
Identical group No.673075 (15 seq.)
>PL171000345
CP001933
Euryarchaeota
Natrialba magadii ATCC 43099 plasmid:pNMAG01
372914
372841
-
Ala
TGC
[ENA]
¡û
>A171001285
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
28475
28548
+
Ala
TGC
-
¡û
>A171001318
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
1684311
1684238
-
Ala
TGC
-
¡û
>W1610001045
ACIT01000002
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
32035
32108
+
Ala
TGC
[ENA]
¡û
>W1610011702
AOHS01000001
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
136
209
+
Ala
TGC
[ENA]
¡û
>W1610011712
AOHS01000020
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
131
204
+
Ala
TGC
[ENA]
¡û
>W1610012450
AOIL01000067
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
827
756
-
Ala
TGC
[ENA]
¡û
>W1610012472
AOIM01000020
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
345
272
-
Ala
TGC
[ENA]
¡û
>W1610012473
AOIM01000020
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
88
15
-
Ala
TGC
[ENA]
¡û
>W1610012504
AOIN01000025
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
3102
3029
-
Ala
TGC
[ENA]
¡û
>W1610012528
AOIN01000072
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
190
117
-
Ala
TGC
[ENA]
¡û
>W1610012578
AOIO01000040
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
404641
404714
+
Ala
TGC
[ENA]
¡û
>W1610012579
AOIP01000001
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
172
245
+
Ala
TGC
[ENA]
¡û
>W1610012582
AOIP01000004
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
82
9
-
Ala
TGC
[ENA]
¡û
>W1610671385
LKCV01000147
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
1722
1795
+
Ala
TGC
[ENA]
¡û
Identical group No.760720 (1 seq.)
>PL191001281
CP034691
Euryarchaeota
Halorubrum sp. BOL3-1 plasmid:p117 (CP034691)
68803
68732
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK