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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = TGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.504348 (6 seq.)
>WENV180318862
OBKM01020878
[OBKM] metagenome; water
255
328
+
Pro
TGG
[ENA]
¢þ
>WENV170659915
JXWS01035594
[JXWS] soil metagenome; rice field; elevated CO2
344
270
-
Pro
TGG
[ENA]
¢þ
>WENV170680476
LFCJ01012312
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5441
5367
-
Pro
TGG
[ENA]
¢þ
>PL191000838
CP031152
Euryarchaeota
Haloplanus sp. CBA1113 plasmid:pCBA1113-02 (CP031152)
8951
9024
+
Pro
TGG
[ENA]
¡û
>W1910891380
NEWJ01000007
Euryarchaeota
Halorubrum sp. SD683 [NEWJ]
34245
34319
+
Pro
TGG
[ENA]
¡û
>W1910912523
NHPJ01000114
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
65987
65914
-
Pro
TGG
[ENA]
¡û
Identical group No.582755 (3 seq.)
>PL191001461
CP040331
Euryarchaeota
Natrinema versiforme BOL5-4 plasmid:pNVE500 (CP040331)
25510
25437
-
Pro
TGG
[ENA]
¡û
>W1910006761
BBJP01000025
Euryarchaeota
Halorubrum halophilum B8 [BBJP]
12430
12503
+
Pro
TGG
[ENA]
¡û
>W1910230268
FOKW01000014
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
19097
19024
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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