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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = TTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236179 (14 seq.)
>WENV180318798
OBKM01011297
[OBKM] metagenome; water
1238
1314
+
Gln
TTG
[ENA]
¢þ
>PL191000836
CP031152
Euryarchaeota
Haloplanus sp. CBA1113 plasmid:pCBA1113-02 (CP031152)
8496
8572
+
Gln
TTG
[ENA]
¡û
>PL191001459
CP040331
Euryarchaeota
Natrinema versiforme BOL5-4 plasmid:pNVE500 (CP040331)
25912
25836
-
Gln
TTG
[ENA]
¡û
>W1910006715
BBJO01000043
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
11080
11004
-
Gln
TTG
[ENA]
¡û
>W1910006759
BBJP01000025
Euryarchaeota
Halorubrum halophilum B8 [BBJP]
12029
12105
+
Gln
TTG
[ENA]
¡û
>W1910226889
FNFC01000035
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
4941
5017
+
Gln
TTG
[ENA]
¡û
>W1910228487
FNPC01000012
Euryarchaeota
Halopenitus persicus DC30,IBRC 10041,KCTC 4046 [FNPC]
55752
55828
+
Gln
TTG
[ENA]
¡û
>W1910230266
FOKW01000014
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
19505
19429
-
Gln
TTG
[ENA]
¡û
>W1910575012
JQKV01000005
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
180660
180736
+
Gln
TTG
[ENA]
¡û
>W1910657586
MASN01000059
Euryarchaeota
Natrialba sp. SSL1 [MASN]
5661
5737
+
Gln
TTG
[ENA]
¡û
>W1910912521
NHPJ01000114
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
66389
66313
-
Gln
TTG
[ENA]
¡û
>W1911709761
QPLT01000181
Euryarchaeota
Halorubrum sp. Atlit-26R [QPLT]
301
225
-
Gln
TTG
[ENA]
¡û
>W1911709996
QPND01000033
Euryarchaeota
Saliphagus sp. LR7 [QPND]
15184
15260
+
Gln
TTG
[ENA]
¡û
>W1911770051
QXIK01000012
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
91068
91144
+
Gln
TTG
[ENA]
¡û
Identical group No.574263 (1 seq.)
>PL171000511
CP003363
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 plasmid:pMETHO01
277761
277688
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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