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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Firmicutes
Anticodon = CAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113110 (2 seq.)
>PL171001648
CP022238
Firmicutes
Exiguobacterium oxidotolerans N4-1P plasmid:unnamed2
399546
399461
-
Leu
CAG
[ENA]
¡û
>WENV170022372
BCQK01007378
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1558
1643
+
Leu
CAG
[ENA]
¢þ
Identical group No.129658 (1 seq.)
>PL171000649
CP007453
Firmicutes
Peptoclostridium acidaminophilum DSM 3953 plasmid:EAL2_808p
441471
441385
-
Leu
CAG
[ENA]
¡û
Identical group No.213253 (1 seq.)
>PL171000754
CP009417
Firmicutes
Jeotgalibacillus malaysiensis D5 plasmid:unnamed
402382
402298
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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