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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Firmicutes
Anticodon = CCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.781126 (77 seq.)
>W1710782859
LJFJ01000004
Bacillota
Limosilactobacillus fermentum [LJFJ]
47621
47691
+
Gly
CCC
[ENA]
¡û
>W1710801550
LJWZ01000001
Bacillota
Limosilactobacillus fermentum [LJWZ]
33449
33519
+
Gly
CCC
[ENA]
¡û
>W1711185540
LWNM01000069
Bacillota
Lactobacillus sp. HMSC24D01 [LWNM]
2384
2314
-
Gly
CCC
[ENA]
¡û
>W1711487629
MKGE01000032
Bacillota
Limosilactobacillus fermentum [MKGE]
69628
69558
-
Gly
CCC
[ENA]
¡û
>W1712106898
NIWV01000005
Bacillota
Limosilactobacillus fermentum [NIWV]
44346
44276
-
Gly
CCC
[ENA]
¡û
>C171057938
CP017151
Bacillota
Limosilactobacillus fermentum NCC2970 [CP017151]
351959
351889
-
Gly
CCC
-
¡û
>C171088284
CP019030
Bacillota
Limosilactobacillus fermentum SNUV175 [CP019030]
1651648
1651718
+
Gly
CCC
-
¡û
>C171115664
CP021104
Bacillota
Limosilactobacillus fermentum FTDC 8312 [CP021104]
1593330
1593260
-
Gly
CCC
-
¡û
>C171123260
CP021790
Bacillota
Limosilactobacillus fermentum LAC FRN-92 [CP021790]
341576
341646
+
Gly
CCC
-
¡û
>WENV180334131
OBLF01005337
[OBLF] metagenome; feces
4791
4861
+
Gly
CCC
[ENA]
¢þ
>WENV180410679
OBUX01001041
[OBUX] human gut metagenome; faeces
1817
1887
+
Gly
CCC
[ENA]
¢þ
>W141092516
AVAB01000001
Bacillota
Limosilactobacillus fermentum MTCC 8711 [AVAB]
1514552
1514482
-
Gly
CCC
[ENA]
¡û
>W141094609
AVCT01000001
Bacillota
Limosilactobacillus fermentum 3872 [AVCT]
31213
31283
+
Gly
CCC
[ENA]
¡û
>WENV181473695
OGFC01000087
[OGFC] metagenome; Human gut stool
61016
60946
-
Gly
CCC
[ENA]
¢þ
>W141148207
AWXS01000169
Bacillota
Limosilactobacillus fermentum Lf1 [AWXS]
36556
36486
-
Gly
CCC
[ENA]
¡û
>WENV181506048
OGGM01000051
[OGGM] metagenome; Human gut stool
88269
88199
-
Gly
CCC
[ENA]
¢þ
>WENV181519188
OGHB01016433
[OGHB] metagenome; Human gut stool
398
328
-
Gly
CCC
[ENA]
¢þ
>WENV181553115
OGIQ01002867
[OGIQ] metagenome; Human gut stool
775
845
+
Gly
CCC
[ENA]
¢þ
>WENV181555817
OGIU01000304
[OGIU] metagenome; Human gut stool
31177
31247
+
Gly
CCC
[ENA]
¢þ
>WENV181564673
OGJH01018667
[OGJH] metagenome; Human gut stool
513
443
-
Gly
CCC
[ENA]
¢þ
>WENV181588134
OGKH01000755
[OGKH] metagenome; Human gut stool
1020
950
-
Gly
CCC
[ENA]
¢þ
>W141180752
AYHA01000148
Bacillota
Limosilactobacillus fermentum NB-22 [AYHA]
33185
33255
+
Gly
CCC
[ENA]
¡û
>WENV182404052
OIEU01001949
[OIEU] human gut metagenome; human gut
5179
5109
-
Gly
CCC
[ENA]
¢þ
>C08006086
AP008937
Bacillota
Limosilactobacillus fermentum IFO 3956 [AP008937]
1513978
1513908
-
Gly
CCC
[Ensembl]
¡û
>WENV183182807
OLPK01001462
[OLPK] human gut metagenome; faeces
10463
10393
-
Gly
CCC
[ENA]
¢þ
>WENV183217300
OLQI01000143
[OLQI] human gut metagenome; faeces
60910
60840
-
Gly
CCC
[ENA]
¢þ
>WENV183307245
OLTD01006125
[OLTD] human gut metagenome; faeces
731
801
+
Gly
CCC
[ENA]
¢þ
>PL191001232
CP033372
Firmicutes
Lactobacillus fermentum DR9 plasmid:unnamed1 (CP033372)
369564
369634
+
Gly
CCC
[ENA]
¡û
>C181004059
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
1381836
1381766
-
Gly
CCC
-
¡û
>C181054790
CP021964
Bacillota
Limosilactobacillus fermentum CBA7106 [CP021964]
1423754
1423684
-
Gly
CCC
-
¡û
>C181196743
CP031195
Bacillota
Limosilactobacillus fermentum LDTM 7301 [CP031195]
948324
948254
-
Gly
CCC
-
¡û
>C181226963
LT906621
Bacillota
Limosilactobacillus fermentum IMDO 130101 [LT906621]
1481018
1480948
-
Gly
CCC
-
¡û
>C191012465
CP016803
Bacillota
Limosilactobacillus fermentum SK152 [CP016803]
1799608
1799678
+
Gly
CCC
-
¡û
>C191119236
CP034099
Bacillota
Limosilactobacillus fermentum LMT2-75 [CP034099]
1453307
1453377
+
Gly
CCC
-
¡û
>C191121389
CP034193
Bacillota
Limosilactobacillus fermentum YL-11 [CP034193]
1343357
1343287
-
Gly
CCC
-
¡û
>C191134203
CP035054
Bacillota
Limosilactobacillus fermentum SRCM103285 [CP035054]
649387
649457
+
Gly
CCC
-
¡û
>C191134263
CP035055
Bacillota
Limosilactobacillus fermentum SRCM 103290 [CP035055]
2026424
2026494
+
Gly
CCC
-
¡û
>W09122671
ACGI01000121
Bacillota
Limosilactobacillus fermentum ATCC 14931 [ACGI]
45131
45201
+
Gly
CCC
[ENA]
¡û
>W141805398
JPKN01000394
Bacillota
Lacticaseibacillus paracasei casei [JPKN]
58900
58830
-
Gly
CCC
[ENA]
¡û
>W1910181256
BJLV01000001
Bacillota
Limosilactobacillus fermentum NBRC 3959 [BJLV]
35099
35169
+
Gly
CCC
[ENA]
¡û
>W1910374068
FUHY01000055
Bacillota
Limosilactobacillus fermentum S13 [FUHY]
108095
108025
-
Gly
CCC
[ENA]
¡û
>W1910374104
FUHZ01000049
Bacillota
Limosilactobacillus fermentum S6 [FUHZ]
108095
108025
-
Gly
CCC
[ENA]
¡û
>W1910954282
NJPQ01000002
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
10055
10125
+
Gly
CCC
[ENA]
¡û
>W1911533691
OKQY01000003
Bacillota
Limosilactobacillus fermentum CECT 9269 [OKQY]
70037
69967
-
Gly
CCC
[ENA]
¡û
>W1810058958
PDKX01000002
Bacillota
Limosilactobacillus fermentum NCDC 400 [PDKX]
58942
58872
-
Gly
CCC
[ENA]
¡û
>W1810090567
PGGE01000002
Bacillota
Limosilactobacillus fermentum 103 [PGGE]
63323
63253
-
Gly
CCC
[ENA]
¡û
>W1810090616
PGGI01000001
Bacillota
Limosilactobacillus fermentum 279 [PGGI]
139481
139411
-
Gly
CCC
[ENA]
¡û
>W1810090668
PGGJ01000001
Bacillota
Limosilactobacillus fermentum 311 [PGGJ]
44419
44489
+
Gly
CCC
[ENA]
¡û
>W1810190815
PKKD01000002
Bacillota
Limosilactobacillus fermentum UMB0187 [PKKD]
71487
71417
-
Gly
CCC
[ENA]
¡û
>W1810196510
PNBB01000001
Bacillota
Limosilactobacillus fermentum LfU21 [PNBB]
106734
106664
-
Gly
CCC
[ENA]
¡û
>W1810223758
POTQ01000003
Bacillota
Limosilactobacillus fermentum CRL1446 [POTQ]
31894
31964
+
Gly
CCC
[ENA]
¡û
>W1810297041
PTLW01000003
Bacillota
Limosilactobacillus fermentum MD IIE-4657 [PTLW]
60229
60159
-
Gly
CCC
[ENA]
¡û
>W1810473348
QAHK01000049
Bacillota
Limosilactobacillus fermentum DS13_7 [QAHK]
10105
10175
+
Gly
CCC
[ENA]
¡û
>W1810489175
QAZV01000040
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
2897
2827
-
Gly
CCC
[ENA]
¡û
>W1810705618
QMJL01000025
Bacillota
Limosilactobacillus fermentum KMB_612 [QMJL]
14942
14872
-
Gly
CCC
[ENA]
¡û
>W1810705656
QMJM01000035
Bacillota
Limosilactobacillus fermentum KMB_613 [QMJM]
14191
14261
+
Gly
CCC
[ENA]
¡û
>W1810811182
QRYA01000001
Bacillota
Limosilactobacillus fermentum AF16-22LB [QRYA]
32437
32507
+
Gly
CCC
[ENA]
¡û
>W1810811836
QRYM01000004
Bacillota
Limosilactobacillus fermentum AF15-40LB [QRYM]
69501
69431
-
Gly
CCC
[ENA]
¡û
>W1810814634
QSAL01000001
Bacillota
Limosilactobacillus fermentum AF11-4-H [QSAL]
137853
137783
-
Gly
CCC
[ENA]
¡û
>C151084283
CP011536
Bacillota
Limosilactobacillus fermentum 3872 [CP011536]
1662665
1662595
-
Gly
CCC
-
¡û
>W10103389
ACQG01000067
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
43379
43449
+
Gly
CCC
[ENA]
¡û
>W1510021804
BCAH01000034
Bacillota
Limosilactobacillus gorillae KZ01 [BCAH]
28414
28484
+
Gly
CCC
[ENA]
¡û
>W1510022525
CBZV010000002
Bacillota
Limosilactobacillus fermentum 222 [CBZV]
114888
114818
-
Gly
CCC
[ENA]
¡û
>C10108385
CP002033
Bacillota
Limosilactobacillus fermentum CECT 5716 [CP002033]
1515072
1515002
-
Gly
CCC
[Ensembl]
¡û
>W11103545
ACQG01000067
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
43379
43449
+
Gly
CCC
[ENA]
¡û
>W1511443754
JUTH01000052
Bacillota
Limosilactobacillus fermentum 779_LFER [JUTH]
11020
10950
-
Gly
CCC
[ENA]
¡û
>W1511567809
LAIK01000001
Bacillota
Limosilactobacillus fermentum LfQi6 [LAIK]
167956
167886
-
Gly
CCC
[ENA]
¡û
>W1511589448
LBDG01000001
Bacillota
Limosilactobacillus fermentum 39 [LBDG]
163317
163387
+
Gly
CCC
[ENA]
¡û
>W1511589516
LBDH01000012
Bacillota
Limosilactobacillus fermentum 90 TC-4 [LBDH]
34349
34279
-
Gly
CCC
[ENA]
¡û
>C161077703
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
2466839
2466909
+
Gly
CCC
-
¡û
>W1610083177
CBUR010000045
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
69871
69801
-
Gly
CCC
[ENA]
¡û
>C131016206
CP005958
Bacillota
Limosilactobacillus fermentum F-6 [CP005958]
1469842
1469772
-
Gly
CCC
[Ensembl]
¡û
>W1610527915
JQAU01000006
Bacillota
Limosilactobacillus fermentum [JQAU]
14697
14767
+
Gly
CCC
[ENA]
¡û
>W1610647367
LJFJ01000004
Bacillota
Limosilactobacillus fermentum [LJFJ]
47621
47691
+
Gly
CCC
[ENA]
¡û
>W1610665507
LJWZ01000001
Bacillota
Limosilactobacillus fermentum [LJWZ]
33449
33519
+
Gly
CCC
[ENA]
¡û
>W1710088297
CBUR010000045
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
69871
69801
-
Gly
CCC
[ENA]
¡û
>W1710629546
JQAU01000006
Bacillota
Limosilactobacillus fermentum [JQAU]
14697
14767
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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