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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Firmicutes
Anticodon = CGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.277015 (79 seq.)
>W1710782888
LJFJ01000005
Bacillota
Limosilactobacillus fermentum [LJFJ]
560122
560198
+
Pro
CGG
[ENA]
¡û
>W1710801578
LJWZ01000021
Bacillota
Limosilactobacillus fermentum [LJWZ]
45240
45316
+
Pro
CGG
[ENA]
¡û
>W1711185549
LWNM01000090
Bacillota
Lactobacillus sp. HMSC24D01 [LWNM]
31376
31452
+
Pro
CGG
[ENA]
¡û
>W131203200
ASXU01000329
Bacillota
Limosilactobacillus fermentum FTDC8312 [ASXU]
4
80
+
Pro
CGG
[ENA]
¡û
>W1711487634
MKGE01000044
Bacillota
Limosilactobacillus fermentum [MKGE]
8263
8187
-
Pro
CGG
[ENA]
¡û
>W1712106895
NIWV01000003
Bacillota
Limosilactobacillus fermentum [NIWV]
42839
42763
-
Pro
CGG
[ENA]
¡û
>C171057925
CP017151
Bacillota
Limosilactobacillus fermentum NCC2970 [CP017151]
554827
554751
-
Pro
CGG
-
¡û
>C171088271
CP019030
Bacillota
Limosilactobacillus fermentum SNUV175 [CP019030]
1389449
1389525
+
Pro
CGG
-
¡û
>C171115651
CP021104
Bacillota
Limosilactobacillus fermentum FTDC 8312 [CP021104]
1866780
1866704
-
Pro
CGG
-
¡û
>C171123302
CP021790
Bacillota
Limosilactobacillus fermentum LAC FRN-92 [CP021790]
1021768
1021692
-
Pro
CGG
-
¡û
>WENV180334314
OBLF01008620
[OBLF] metagenome; feces
3673
3597
-
Pro
CGG
[ENA]
¢þ
>WENV180410786
OBUX01005166
[OBUX] human gut metagenome; faeces
992
916
-
Pro
CGG
[ENA]
¢þ
>W141092503
AVAB01000001
Bacillota
Limosilactobacillus fermentum MTCC 8711 [AVAB]
1734481
1734405
-
Pro
CGG
[ENA]
¡û
>W141094651
AVCT01000213
Bacillota
Limosilactobacillus fermentum 3872 [AVCT]
171
247
+
Pro
CGG
[ENA]
¡û
>WENV181469124
OGES01060440
[OGES] metagenome; Human gut stool
5
81
+
Pro
CGG
[ENA]
¢þ
>WENV181473775
OGFC01000222
[OGFC] metagenome; Human gut stool
61287
61211
-
Pro
CGG
[ENA]
¢þ
>W141148224
AWXS01000200
Bacillota
Limosilactobacillus fermentum Lf1 [AWXS]
5589
5513
-
Pro
CGG
[ENA]
¡û
>WENV181506140
OGGM01000152
[OGGM] metagenome; Human gut stool
43749
43825
+
Pro
CGG
[ENA]
¢þ
>WENV181518992
OGHB01002327
[OGHB] metagenome; Human gut stool
1905
1981
+
Pro
CGG
[ENA]
¢þ
>WENV181555860
OGIU01000464
[OGIU] metagenome; Human gut stool
150
226
+
Pro
CGG
[ENA]
¢þ
>WENV181564919
OGJH01066195
[OGJH] metagenome; Human gut stool
380
456
+
Pro
CGG
[ENA]
¢þ
>WENV181588089
OGKH01000573
[OGKH] metagenome; Human gut stool
21381
21305
-
Pro
CGG
[ENA]
¢þ
>W141180745
AYHA01000104
Bacillota
Limosilactobacillus fermentum NB-22 [AYHA]
68266
68190
-
Pro
CGG
[ENA]
¡û
>WENV182954547
OKWA01003831
[OKWA] human gut metagenome; human gut
81
157
+
Pro
CGG
[ENA]
¢þ
>C08006073
AP008937
Bacillota
Limosilactobacillus fermentum IFO 3956 [AP008937]
1733784
1733708
-
Pro
CGG
[Ensembl]
¡û
>WENV183182545
OLPK01000463
[OLPK] human gut metagenome; faeces
3673
3597
-
Pro
CGG
[ENA]
¢þ
>WENV183217707
OLQI01001368
[OLQI] human gut metagenome; faeces
7978
7902
-
Pro
CGG
[ENA]
¢þ
>WENV183307243
OLTD01005843
[OLTD] human gut metagenome; faeces
583
507
-
Pro
CGG
[ENA]
¢þ
>PL191001219
CP033372
Firmicutes
Lactobacillus fermentum DR9 plasmid:unnamed1 (CP033372)
113907
113983
+
Pro
CGG
[ENA]
¡û
>C181004046
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
1633992
1633916
-
Pro
CGG
-
¡û
>C181054777
CP021964
Bacillota
Limosilactobacillus fermentum CBA7106 [CP021964]
1633946
1633870
-
Pro
CGG
-
¡û
>C181196730
CP031195
Bacillota
Limosilactobacillus fermentum LDTM 7301 [CP031195]
1156527
1156451
-
Pro
CGG
-
¡û
>C181226950
LT906621
Bacillota
Limosilactobacillus fermentum IMDO 130101 [LT906621]
1715384
1715308
-
Pro
CGG
-
¡û
>C191012452
CP016803
Bacillota
Limosilactobacillus fermentum SK152 [CP016803]
1591218
1591294
+
Pro
CGG
-
¡û
>C191119223
CP034099
Bacillota
Limosilactobacillus fermentum LMT2-75 [CP034099]
1194994
1195070
+
Pro
CGG
-
¡û
>C191121376
CP034193
Bacillota
Limosilactobacillus fermentum YL-11 [CP034193]
1580447
1580371
-
Pro
CGG
-
¡û
>C191134190
CP035054
Bacillota
Limosilactobacillus fermentum SRCM103285 [CP035054]
402171
402247
+
Pro
CGG
-
¡û
>C191134250
CP035055
Bacillota
Limosilactobacillus fermentum SRCM 103290 [CP035055]
1796389
1796465
+
Pro
CGG
-
¡û
>W09122659
ACGI01000114
Bacillota
Limosilactobacillus fermentum ATCC 14931 [ACGI]
9285
9361
+
Pro
CGG
[ENA]
¡û
>W141805336
JPKN01000031
Bacillota
Lacticaseibacillus paracasei casei [JPKN]
23524
23600
+
Pro
CGG
[ENA]
¡û
>W1910181267
BJLV01000022
Bacillota
Limosilactobacillus fermentum NBRC 3959 [BJLV]
5589
5513
-
Pro
CGG
[ENA]
¡û
>W1910374051
FUHY01000033
Bacillota
Limosilactobacillus fermentum S13 [FUHY]
6956
6880
-
Pro
CGG
[ENA]
¡û
>W1910374097
FUHZ01000034
Bacillota
Limosilactobacillus fermentum S6 [FUHZ]
6956
6880
-
Pro
CGG
[ENA]
¡û
>W1910954292
NJPQ01000005
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
71531
71607
+
Pro
CGG
[ENA]
¡û
>W1911533686
OKQY01000001
Bacillota
Limosilactobacillus fermentum CECT 9269 [OKQY]
61590
61514
-
Pro
CGG
[ENA]
¡û
>W1810058980
PDKX01000043
Bacillota
Limosilactobacillus fermentum NCDC 400 [PDKX]
4109
4033
-
Pro
CGG
[ENA]
¡û
>W1810090575
PGGE01000005
Bacillota
Limosilactobacillus fermentum 103 [PGGE]
42847
42771
-
Pro
CGG
[ENA]
¡û
>W1810090626
PGGI01000005
Bacillota
Limosilactobacillus fermentum 279 [PGGI]
68393
68317
-
Pro
CGG
[ENA]
¡û
>W1810090682
PGGJ01000023
Bacillota
Limosilactobacillus fermentum 311 [PGGJ]
3950
3874
-
Pro
CGG
[ENA]
¡û
>W1810190821
PKKD01000008
Bacillota
Limosilactobacillus fermentum UMB0187 [PKKD]
38047
37971
-
Pro
CGG
[ENA]
¡û
>W1810196541
PNBB01000030
Bacillota
Limosilactobacillus fermentum LfU21 [PNBB]
6869
6945
+
Pro
CGG
[ENA]
¡û
>W1810223754
POTQ01000001
Bacillota
Limosilactobacillus fermentum CRL1446 [POTQ]
66790
66714
-
Pro
CGG
[ENA]
¡û
>W1810297059
PTLW01000041
Bacillota
Limosilactobacillus fermentum MD IIE-4657 [PTLW]
8053
8129
+
Pro
CGG
[ENA]
¡û
>W1810473316
QAHK01000005
Bacillota
Limosilactobacillus fermentum DS13_7 [QAHK]
56541
56617
+
Pro
CGG
[ENA]
¡û
>W1810489149
QAZV01000003
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
119781
119857
+
Pro
CGG
[ENA]
¡û
>W1810695526
QLNN01000078
Bacillota
Limosilactobacillus fermentum LF2 [QLNN]
43503
43427
-
Pro
CGG
[ENA]
¡û
>W1810705590
QMJL01000002
Bacillota
Limosilactobacillus fermentum KMB_612 [QMJL]
11213
11289
+
Pro
CGG
[ENA]
¡û
>W1810705645
QMJM01000015
Bacillota
Limosilactobacillus fermentum KMB_613 [QMJM]
3651
3575
-
Pro
CGG
[ENA]
¡û
>W1810811188
QRYA01000002
Bacillota
Limosilactobacillus fermentum AF16-22LB [QRYA]
61032
60956
-
Pro
CGG
[ENA]
¡û
>W1810811842
QRYM01000006
Bacillota
Limosilactobacillus fermentum AF15-40LB [QRYM]
43426
43350
-
Pro
CGG
[ENA]
¡û
>W1810814640
QSAL01000002
Bacillota
Limosilactobacillus fermentum AF11-4-H [QSAL]
44896
44972
+
Pro
CGG
[ENA]
¡û
>C151084270
CP011536
Bacillota
Limosilactobacillus fermentum 3872 [CP011536]
1917562
1917486
-
Pro
CGG
-
¡û
>W10103379
ACQG01000034
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
38836
38912
+
Pro
CGG
[ENA]
¡û
>W1510021772
BCAH01000007
Bacillota
Limosilactobacillus gorillae KZ01 [BCAH]
62108
62184
+
Pro
CGG
[ENA]
¡û
>W1510022532
CBZV010000005
Bacillota
Limosilactobacillus fermentum 222 [CBZV]
44686
44610
-
Pro
CGG
[ENA]
¡û
>C10108373
CP002033
Bacillota
Limosilactobacillus fermentum CECT 5716 [CP002033]
1735018
1734942
-
Pro
CGG
[Ensembl]
¡û
>W11103535
ACQG01000034
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
38836
38912
+
Pro
CGG
[ENA]
¡û
>W1511443771
JUTH01000130
Bacillota
Limosilactobacillus fermentum 779_LFER [JUTH]
449
525
+
Pro
CGG
[ENA]
¡û
>W1511567815
LAIK01000002
Bacillota
Limosilactobacillus fermentum LfQi6 [LAIK]
152366
152290
-
Pro
CGG
[ENA]
¡û
>W1511589455
LBDG01000001
Bacillota
Limosilactobacillus fermentum 39 [LBDG]
69201
69125
-
Pro
CGG
[ENA]
¡û
>W1511589502
LBDH01000001
Bacillota
Limosilactobacillus fermentum 90 TC-4 [LBDH]
29570
29646
+
Pro
CGG
[ENA]
¡û
>C161077690
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
2247857
2247933
+
Pro
CGG
-
¡û
>W1610083160
CBUR010000009
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
3710
3634
-
Pro
CGG
[ENA]
¡û
>C131016193
CP005958
Bacillota
Limosilactobacillus fermentum F-6 [CP005958]
1696913
1696837
-
Pro
CGG
[Ensembl]
¡û
>W1610527928
JQAU01000040
Bacillota
Limosilactobacillus fermentum [JQAU]
8601
8677
+
Pro
CGG
[ENA]
¡û
>W1610647396
LJFJ01000005
Bacillota
Limosilactobacillus fermentum [LJFJ]
560122
560198
+
Pro
CGG
[ENA]
¡û
>W1610665535
LJWZ01000021
Bacillota
Limosilactobacillus fermentum [LJWZ]
45240
45316
+
Pro
CGG
[ENA]
¡û
>W1710088280
CBUR010000009
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
3710
3634
-
Pro
CGG
[ENA]
¡û
>W1710629559
JQAU01000040
Bacillota
Limosilactobacillus fermentum [JQAU]
8601
8677
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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