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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Firmicutes
Anticodon = CTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.687123 (4 seq.)
>W1711791296
MWIW01000011
Bacillota
Clostridium botulinum [MWIW]
10126
10200
+
Glu
CTC
[ENA]
¡û
>PL191000221
CP013852
Firmicutes
Clostridium botulinum B305 plasmid:pRSJ6_2 (CP013852)
7494
7568
+
Glu
CTC
[ENA]
¡û
>PL191000223
CP014172
Firmicutes
Clostridium botulinum B609 plasmid:pRSJ22_1 (CP014172)
22789
22863
+
Glu
CTC
[ENA]
¡û
>PL191000224
CP014221
Firmicutes
Clostridium botulinum B515 plasmid:pRSJ21_2 (CP014221)
9010
9084
+
Glu
CTC
[ENA]
¡û
Identical group No.725973 (2 seq.)
>PL191000222
CP014172
Firmicutes
Clostridium botulinum B609 plasmid:pRSJ22_1 (CP014172)
7577
7651
+
Glu
CTC
[ENA]
¡û
>PL191000225
CP014221
Firmicutes
Clostridium botulinum B515 plasmid:pRSJ21_2 (CP014221)
17092
17166
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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