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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Firmicutes
Anticodon = CTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.789878 (8 seq.)
>PL171000450
CP002404
Firmicutes
Ruminococcus albus 7 = DSM 20455 plasmid:pRUMAL01
101765
101835
+
Gln
CTG
[ENA]
¡û
>W141280007
JAGS01000001
Bacillota
Ruminococcus albus AD2013 [JAGS]
3701197
3701267
+
Gln
CTG
[ENA]
¡û
>W141280050
JAGS01000005
Bacillota
Ruminococcus albus AD2013 [JAGS]
227617
227547
-
Gln
CTG
[ENA]
¡û
>W141428637
JEOB01000001
Bacillota
Ruminococcus albus SY3 [JEOB]
623076
623006
-
Gln
CTG
[ENA]
¡û
>W141428696
JEOB01000004
Bacillota
Ruminococcus albus SY3 [JEOB]
1162835
1162765
-
Gln
CTG
[ENA]
¡û
>W141561835
JHYT01000051
Bacillota
Ruminococcus albus 7 = DSM 20455 [JHYT]
4068
3998
-
Gln
CTG
[ENA]
¡û
>W10126724
AEDJ01000072
Bacillota
Ruminococcus albus 7 [AEDJ]
12629
12699
+
Gln
CTG
[ENA]
¡û
>W11133985
AEDJ01000072
Bacillota
Ruminococcus albus 7 [AEDJ]
12629
12699
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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