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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Firmicutes
Anticodon = GGC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.485837 (13 seq.)
>W1711330247
MBMU01000040
Bacillota
Planococcus faecalis [MBMU]
7905
7977
+
Ala
GGC
[ENA]
¡û
>PL171001262
CP016544
Firmicutes
Planococcus donghaensis DSM 22276 plasmid:pPD76
7035
6963
-
Ala
GGC
[ENA]
¡û
>C171092775
CP019401
Bacillota
Planococcus faecalis AJ003 [CP019401]
169416
169488
+
Ala
GGC
-
¡û
>W131055443
ANBV01000020
Bacillota
Planococcus halocryophilus Or1 [ANBV]
1301
1229
-
Ala
GGC
[ENA]
¡û
>W1511345577
JRGN01000136
Bacillota
Planococcus sp. CAU13 [JRGN]
5254
5182
-
Ala
GGC
[ENA]
¡û
>W11142474
AEPB01000039
Bacillota
Planococcus donghaensis MPA1U2 [AEPB]
659
731
+
Ala
GGC
[ENA]
¡û
>C161058739
CP013661
Bacillota
Planococcus kocurii ATCC 43650 [CP013661]
1593460
1593388
-
Ala
GGC
[Ensembl]
¡û
>C161098337
CP016534
Bacillota
Planococcus antarcticus DSM 14505 [CP016534]
403087
403015
-
Ala
GGC
[Ensembl]
¡û
>C161098406
CP016537
Bacillota
Planococcus halocryophilus DSM 24743 [CP016537]
2710317
2710389
+
Ala
GGC
[Ensembl]
¡û
>C161098580
CP016540
Bacillota
Planococcus versutus L10.15 [CP016540]
1390230
1390158
-
Ala
GGC
[Ensembl]
¡û
>C161098646
CP016543
Bacillota
Planococcus donghaensis DSM 22276 [CP016543]
3142522
3142450
-
Ala
GGC
[Ensembl]
¡û
>W121071548
AJYB01000002
Bacillota
Planococcus antarcticus DSM 14505 [AJYB]
287
359
+
Ala
GGC
[ENA]
¡û
>W1610521074
JHDT01000006
Bacillota
Planococcus versutus L10.15 [JHDT]
798
870
+
Ala
GGC
[ENA]
¡û
Identical group No.491068 (2 seq.)
>W131216548
ATVX01000013
Bacillota
Butyrivibrio sp. VCB2006 [ATVX]
77571
77643
+
Ala
GGC
[ENA]
¡û
>PL171000340
CP001813
Firmicutes
Butyrivibrio proteoclasticus B316 plasmid:pCY186
104331
104259
-
Ala
GGC
[ENA]
¡û
Identical group No.538594 (1 seq.)
>PL171000647
CP007453
Firmicutes
Peptoclostridium acidaminophilum DSM 3953 plasmid:EAL2_808p
118898
118973
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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