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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Firmicutes
Anticodon = TCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2168 (2 seq.)
>PL191000826
CP030933
Firmicutes
Enterococcus gilvus CR1 plasmid:pCR1A (CP030933)
575599
575503
-
Sec
TCA
[ENA]
¡û
>W1910177325
BJDQ01000012
Bacillota
Enterococcus dongliensis Apr-63 [BJDQ]
19241
19145
-
Sec
TCA
[ENA]
¡û
Identical group No.3396 (36 seq.)
>PL173000088
CP007647
Firmicutes
Lactobacillus salivarius JCM1046 plasmid:pMP1046A
18574
18481
-
SeC(p)
TCA
[ENA]
¡û
>PL173000208
LT604075
Firmicutes
Lactobacillus salivarius plasmid:II
161666
161573
-
SeC(p)
TCA
[ENA]
¡û
>W1930011879
LXYX01000133
Bacillota
Ligilactobacillus salivarius KLW010 [LXYX]
15281
15184
-
SeC
TCA
[ENA]
¡û
>W1930011881
LXYY01000016
Bacillota
Ligilactobacillus salivarius KLW009 [LXYY]
18044
18141
+
SeC
TCA
[ENA]
¡û
>W1930011883
LXYZ01000078
Bacillota
Ligilactobacillus salivarius KLW008 [LXYZ]
18044
18141
+
SeC
TCA
[ENA]
¡û
>W1930011886
LXZA01000010
Bacillota
Ligilactobacillus salivarius KLW007 [LXZA]
15028
14931
-
SeC
TCA
[ENA]
¡û
>W1930011887
LXZB01000011
Bacillota
Ligilactobacillus salivarius KLW006 [LXZB]
15024
14927
-
SeC
TCA
[ENA]
¡û
>W1930011890
LXZC01000044
Bacillota
Ligilactobacillus salivarius KLW005 [LXZC]
63718
63815
+
SeC
TCA
[ENA]
¡û
>W1930011892
LXZF01000031
Bacillota
Ligilactobacillus salivarius KLW002 [LXZF]
5437
5340
-
SeC
TCA
[ENA]
¡û
>W1930011896
LXZH01000046
Bacillota
Ligilactobacillus salivarius KLF007 [LXZH]
5192
5095
-
SeC
TCA
[ENA]
¡û
>W1930011897
LXZJ01000039
Bacillota
Ligilactobacillus salivarius KLF005 [LXZJ]
14999
14902
-
SeC
TCA
[ENA]
¡û
>W1930011903
LXZO01000145
Bacillota
Ligilactobacillus salivarius KLA006 [LXZO]
58602
58699
+
SeC
TCA
[ENA]
¡û
>W1930011906
LXZP01000089
Bacillota
Ligilactobacillus salivarius KLA005 [LXZP]
5074
4977
-
SeC
TCA
[ENA]
¡û
>W1930011908
LXZQ01000021
Bacillota
Ligilactobacillus salivarius KLA004 [LXZQ]
35685
35782
+
SeC
TCA
[ENA]
¡û
>W1930011909
LXZR01000023
Bacillota
Ligilactobacillus salivarius KLA003 [LXZR]
5076
4979
-
SeC
TCA
[ENA]
¡û
>W1930011911
LXZS01000011
Bacillota
Ligilactobacillus salivarius KLA002 [LXZS]
5075
4978
-
SeC
TCA
[ENA]
¡û
>W1930011915
LXZT01000097
Bacillota
Ligilactobacillus salivarius KLA001 [LXZT]
5073
4976
-
SeC
TCA
[ENA]
¡û
>W1930020853
NDYW01000014
Bacillota
Ligilactobacillus salivarius L28 [NDYW]
7035
6938
-
SeC
TCA
[ENA]
¡û
>W1830015475
QRMK01000009
Bacillota
Ligilactobacillus salivarius AM09-40 [QRMK]
30379
30476
+
SeC
TCA
[ENA]
¡û
>W1830017736
QSLH01000010
Bacillota
Ligilactobacillus salivarius AM25-8 [QSLH]
18937
19034
+
SeC
TCA
[ENA]
¡û
>W10124266
AEBA01000066
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
12403
12310
-
SeC
TCA
[ENA]
¡û
>W1730023705
LXZG01000083
Bacillota
Ligilactobacillus salivarius [LXZG]
18044
18137
+
SeC(p)
TCA
[ENA]
¡û
>W1730034078
MSCR01000032
Bacillota
Ligilactobacillus salivarius [MSCR]
25634
25541
-
SeC(p)
TCA
[ENA]
¡û
>W1730038491
NBDX01000033
Bacillota
Ligilactobacillus salivarius [NBDX]
134530
134437
-
SeC(p)
TCA
[ENA]
¡û
>W1730038492
NBEB01000081
Bacillota
Ligilactobacillus salivarius [NBEB]
4069
3976
-
SeC(p)
TCA
[ENA]
¡û
>W1730038493
NBEC01000072
Bacillota
Ligilactobacillus salivarius [NBEC]
4069
3976
-
SeC(p)
TCA
[ENA]
¡û
>W1730038494
NBED01000042
Bacillota
Ligilactobacillus salivarius [NBED]
138856
138763
-
SeC(p)
TCA
[ENA]
¡û
>W1730038496
NBEJ01000025
Bacillota
Ligilactobacillus salivarius [NBEJ]
5537
5444
-
SeC(p)
TCA
[ENA]
¡û
>W1730038497
NBEM01000026
Bacillota
Ligilactobacillus salivarius [NBEM]
73386
73293
-
SeC(p)
TCA
[ENA]
¡û
>W1730038499
NBEO01000036
Bacillota
Ligilactobacillus salivarius [NBEO]
234
141
-
SeC(p)
TCA
[ENA]
¡û
>W1730038500
NBEP01000089
Bacillota
Ligilactobacillus salivarius [NBEP]
19481
19574
+
SeC(p)
TCA
[ENA]
¡û
>W1730038501
NBEQ01000054
Bacillota
Ligilactobacillus salivarius [NBEQ]
34228
34135
-
SeC(p)
TCA
[ENA]
¡û
>W1730038502
NBER01000051
Bacillota
Ligilactobacillus salivarius [NBER]
60662
60569
-
SeC(p)
TCA
[ENA]
¡û
>W1730038505
NBEW01000070
Bacillota
Ligilactobacillus salivarius [NBEW]
73994
73901
-
SeC(p)
TCA
[ENA]
¡û
>W1730038506
NBEX01000093
Bacillota
Ligilactobacillus salivarius [NBEX]
72047
71954
-
SeC(p)
TCA
[ENA]
¡û
>W1730038508
NBEY01000090
Bacillota
Ligilactobacillus salivarius [NBEY]
125658
125565
-
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK