This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Food metagenome, Jonggazip commercial cabbage kimchi
Anticodon = ACG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306554 (86 seq.)
>W131055715
ANCA01000006
Bacillota
Weissella ceti NC36 [ANCA]
225081
225006
-
Arg
ACG
[ENA]
¡û
>W1711166843
LVVN01000001
Bacillota
Weissella halotolerans [LVVN]
257673
257597
-
Arg
ACG
[ENA]
¡û
>W1711166883
LVVN01000026
Bacillota
Weissella halotolerans [LVVN]
13437
13362
-
Arg
ACG
[ENA]
¡û
>W131215185
ATUU01000003
Bacillota
Weissella halotolerans DSM 20190 [ATUU]
146194
146269
+
Arg
ACG
[ENA]
¡û
>W131055689
ANCA01000005
Bacillota
Weissella ceti NC36 [ANCA]
3748
3821
+
Arg
ACG
[ENA]
¡û
>W131215171
ATUU01000002
Bacillota
Weissella halotolerans DSM 20190 [ATUU]
267935
267859
-
Arg
ACG
[ENA]
¡û
>W141234674
BAWR01000001
Bacillota
Weissella oryzae SG25 [BAWR]
95386
95309
-
Arg
ACG
[ENA]
¡û
>W141234692
BAWR01000010
Bacillota
Weissella oryzae SG25 [BAWR]
95127
95052
-
Arg
ACG
[ENA]
¡û
>W141234695
BAWR01000012
Bacillota
Weissella oryzae SG25 [BAWR]
79441
79516
+
Arg
ACG
[ENA]
¡û
>C181143155
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
939962
940037
+
Arg
ACG
-
¡û
>C181143171
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
1251006
1251079
+
Arg
ACG
-
¡û
>C191155398
CP037940
Bacillota
Periweissella cryptocerci 26KH-42 [CP037940]
2345805
2345880
+
Arg
ACG
-
¡û
>C191155416
CP037940
Bacillota
Periweissella cryptocerci 26KH-42 [CP037940]
1310080
1310005
-
Arg
ACG
-
¡û
>C191155420
CP037940
Bacillota
Periweissella cryptocerci 26KH-42 [CP037940]
1309575
1309499
-
Arg
ACG
-
¡û
>W1910181230
BJLU01000004
Bacillota
Weissella viridescens NBRC 3949 [BJLU]
19176
19252
+
Arg
ACG
[ENA]
¡û
>W1910181231
BJLU01000004
Bacillota
Weissella viridescens NBRC 3949 [BJLU]
19289
19364
+
Arg
ACG
[ENA]
¡û
>W1910181252
BJLU01000022
Bacillota
Weissella viridescens NBRC 3949 [BJLU]
439
364
-
Arg
ACG
[ENA]
¡û
>W1910748537
MIXX01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2137 [MIXX]
232380
232305
-
Arg
ACG
[ENA]
¡û
>W1910748578
MIXX01000019
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2137 [MIXX]
87806
87731
-
Arg
ACG
[ENA]
¡û
>W1910748588
MIXY01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2138 [MIXY]
739
814
+
Arg
ACG
[ENA]
¡û
>W1910748615
MIXY01000003
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2138 [MIXY]
53403
53328
-
Arg
ACG
[ENA]
¡û
>W1910748639
MIXZ01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2139 [MIXZ]
232254
232179
-
Arg
ACG
[ENA]
¡û
>W1910748679
MIXZ01000023
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2139 [MIXZ]
87806
87731
-
Arg
ACG
[ENA]
¡û
>W1910748685
MIYA01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2140 [MIYA]
48
123
+
Arg
ACG
[ENA]
¡û
>W1910748730
MIYA01000041
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2140 [MIYA]
52764
52689
-
Arg
ACG
[ENA]
¡û
>W1910748743
MIYB01000022
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2141 [MIYB]
750
825
+
Arg
ACG
[ENA]
¡û
>W1910748787
MIYC01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2142 [MIYC]
232380
232305
-
Arg
ACG
[ENA]
¡û
>W1910748828
MIYC01000021
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.2142 [MIYC]
87806
87731
-
Arg
ACG
[ENA]
¡û
>W1910748839
MIYD01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.726 [MIYD]
739
814
+
Arg
ACG
[ENA]
¡û
>W1910748885
MIYD01000028
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.726 [MIYD]
52764
52689
-
Arg
ACG
[ENA]
¡û
>W1910748892
MIYE01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.54 [MIYE]
3282
3357
+
Arg
ACG
[ENA]
¡û
>W1910748934
MIYE01000050
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.54 [MIYE]
55881
55806
-
Arg
ACG
[ENA]
¡û
>W1910748945
MIYF01000012
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.1597 [MIYF]
750
825
+
Arg
ACG
[ENA]
¡û
>W1910748979
MIYF01000023
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.1597 [MIYF]
55472
55397
-
Arg
ACG
[ENA]
¡û
>W1910748994
MIYG01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.1150 [MIYG]
749
824
+
Arg
ACG
[ENA]
¡û
>W1910749033
MIYG01000020
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.1150 [MIYG]
37215
37290
+
Arg
ACG
[ENA]
¡û
>W1910749047
MIYH01000001
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.392 [MIYH]
749
824
+
Arg
ACG
[ENA]
¡û
>W1910749091
MIYH01000040
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.392 [MIYH]
55881
55806
-
Arg
ACG
[ENA]
¡û
>W1910749100
MIYJ01000001
Bacillota
Fructilactobacillus sanfranciscensis DSM 20451 TMW 1.53 [MIYJ]
750
825
+
Arg
ACG
[ENA]
¡û
>W1910749141
MIYJ01000044
Bacillota
Fructilactobacillus sanfranciscensis DSM 20451 TMW 1.53 [MIYJ]
87492
87417
-
Arg
ACG
[ENA]
¡û
>W1911493506
OBHM01000005
Bacillota
Weissella viridescens MFPC16A2805 [OBHM]
102065
101989
-
Arg
ACG
[ENA]
¡û
>W1911493507
OBHM01000005
Bacillota
Weissella viridescens MFPC16A2805 [OBHM]
101952
101877
-
Arg
ACG
[ENA]
¡û
>W1911493529
OBHM01000012
Bacillota
Weissella viridescens MFPC16A2805 [OBHM]
190
265
+
Arg
ACG
[ENA]
¡û
>W1810789153
QRFO01000041
Bacillota
Fructilactobacillus sanfranciscensis JCM 5668 [QRFO]
538
613
+
Arg
ACG
[ENA]
¡û
>W1810789167
QRFO01000043
Bacillota
Fructilactobacillus sanfranciscensis JCM 5668 [QRFO]
24915
24990
+
Arg
ACG
[ENA]
¡û
>C151029189
CP007588
Bacillota
Weissella tructae WS08 [CP007588]
298490
298563
+
Arg
ACG
[Ensembl]
¡û
>C151029214
CP007588
Bacillota
Weissella tructae WS08 [CP007588]
1209901
1209826
-
Arg
ACG
[Ensembl]
¡û
>C151045741
CP009223
Bacillota
Weissella ceti WS74 [CP009223]
298440
298513
+
Arg
ACG
[Ensembl]
¡û
>C151045765
CP009223
Bacillota
Weissella ceti WS74 [CP009223]
1243578
1243503
-
Arg
ACG
[Ensembl]
¡û
>C151045808
CP009224
Bacillota
Weissella ceti WS105 [CP009224]
297820
297893
+
Arg
ACG
[Ensembl]
¡û
>C151045832
CP009224
Bacillota
Weissella ceti WS105 [CP009224]
1244625
1244550
-
Arg
ACG
[Ensembl]
¡û
>W1510020146
BBXQ01000004
Bacillota
Fructobacillus ficulneus JCM 12225 [BBXQ]
6371
6296
-
Arg
ACG
[ENA]
¡û
>W1510020263
BBXS01000025
Bacillota
Fructobacillus pseudoficulneus DSM 15468 [BBXS]
114198
114123
-
Arg
ACG
[ENA]
¡û
>W1510020312
BBXT01000060
Bacillota
Fructobacillus tropaeoli F214-1 [BBXT]
449
524
+
Arg
ACG
[ENA]
¡û
>WENV11100327
AEKF01000075
Food metagenome, Jonggazip commercial cabbage kimchi
1593
1668
+
Arg
ACG
[ENA]
¡û
>WENV11100344
AEKF01000096
Food metagenome, Jonggazip commercial cabbage kimchi
553
626
+
Arg
ACG
[ENA]
¡û
>C11113672
CP002461
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.1304 [CP002461]
1106524
1106449
-
Arg
ACG
[Ensembl]
¡û
>C11113682
CP002461
Bacillota
Fructilactobacillus sanfranciscensis TMW 1.1304 [CP002461]
1004790
1004715
-
Arg
ACG
[Ensembl]
¡û
>C11123739
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
875475
875550
+
Arg
ACG
[Ensembl]
¡û
>C11123755
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
1173613
1173686
+
Arg
ACG
[Ensembl]
¡û
>W1511641864
LDUY01000014
Bacillota
Fructobacillus sp. EFB-N1 [LDUY]
46452
46377
-
Arg
ACG
[ENA]
¡û
>W121045237
AICN01000078
Bacillota
Limosilactobacillus gastricus PS3 [AICN]
79434
79359
-
Arg
ACG
[ENA]
¡û
>W121082004
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
48201
48276
+
Arg
ACG
[ENA]
¡û
>W121082022
AKGG01000005
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
244754
244827
+
Arg
ACG
[ENA]
¡û
>W1610036783
AZFN01000054
Bacillota
Limosilactobacillus gastricus DSM 16045 [AZFN]
43
118
+
Arg
ACG
[ENA]
¡û
>W1610097735
CYXF01000003
Bacillota
Weissella viridescens [CYXF]
18304
18381
+
Arg
ACG
[ENA]
¡û
>W1610097736
CYXF01000003
Bacillota
Weissella viridescens [CYXF]
18417
18492
+
Arg
ACG
[ENA]
¡û
>W1610097791
CYXF01000148
Bacillota
Weissella viridescens [CYXF]
855
930
+
Arg
ACG
[ENA]
¡û
>W1610528069
JQAX01000002
Bacillota
Weissella halotolerans DSM 20190 [JQAX]
144720
144796
+
Arg
ACG
[ENA]
¡û
>W1610528079
JQAX01000003
Bacillota
Weissella halotolerans DSM 20190 [JQAX]
146873
146798
-
Arg
ACG
[ENA]
¡û
>W1610528709
JQBM01000002
Bacillota
Weissella viridescens [JQBM]
156134
156209
+
Arg
ACG
[ENA]
¡û
>W1610529549
JQCD01000031
Bacillota
Weissella minor [JQCD]
175263
175340
+
Arg
ACG
[ENA]
¡û
>W1610529550
JQCD01000031
Bacillota
Weissella minor [JQCD]
175386
175461
+
Arg
ACG
[ENA]
¡û
>W1610977383
LVVN01000001
Bacillota
Weissella halotolerans [LVVN]
257673
257597
-
Arg
ACG
[ENA]
¡û
>W1610977423
LVVN01000026
Bacillota
Weissella halotolerans [LVVN]
13437
13362
-
Arg
ACG
[ENA]
¡û
>W1710033822
AZFN01000054
Bacillota
Limosilactobacillus gastricus DSM 16045 [AZFN]
43
118
+
Arg
ACG
[ENA]
¡û
>W1710100490
CYXF01000003
Bacillota
Weissella viridescens [CYXF]
18304
18381
+
Arg
ACG
[ENA]
¡û
>W1710100491
CYXF01000003
Bacillota
Weissella viridescens [CYXF]
18417
18492
+
Arg
ACG
[ENA]
¡û
>W1710100546
CYXF01000148
Bacillota
Weissella viridescens [CYXF]
855
930
+
Arg
ACG
[ENA]
¡û
>W1710540374
FNWS01000007
Bacillota
Fructobacillus pseudoficulneus [FNWS]
68676
68601
-
Arg
ACG
[ENA]
¡û
>W1710557817
FOLI01000004
Bacillota
Fructobacillus durionis [FOLI]
712
788
+
Arg
ACG
[ENA]
¡û
>W1710629659
JQAX01000002
Bacillota
Weissella halotolerans DSM 20190 [JQAX]
144720
144796
+
Arg
ACG
[ENA]
¡û
>W1710629669
JQAX01000003
Bacillota
Weissella halotolerans DSM 20190 [JQAX]
146873
146798
-
Arg
ACG
[ENA]
¡û
>W1710630299
JQBM01000002
Bacillota
Weissella viridescens [JQBM]
156134
156209
+
Arg
ACG
[ENA]
¡û
>W1710631139
JQCD01000031
Bacillota
Weissella minor [JQCD]
175263
175340
+
Arg
ACG
[ENA]
¡û
>W1710631140
JQCD01000031
Bacillota
Weissella minor [JQCD]
175386
175461
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK