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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Food metagenome, Jonggazip commercial cabbage kimchi
Anticodon = CGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452014 (89 seq.)
>W1710885343
LMXE01000002
Bacillota
Leuconostoc mesenteroides [LMXE]
212860
212935
+
Thr
CGT
[ENA]
¡û
>W1711612512
MOWQ01000034
Bacillota
Leuconostoc sp. BM2 [MOWQ]
2623
2549
-
Thr
CGT
[ENA]
¡û
>W1711617432
MPAL01000032
Bacillota
Leuconostoc pseudomesenteroides [MPAL]
3055
2981
-
Thr
CGT
[ENA]
¡û
>W1711617462
MPAM01000009
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAM]
32901
32976
+
Thr
CGT
[ENA]
¡û
>W1711617510
MPAN01000009
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAN]
32936
33011
+
Thr
CGT
[ENA]
¡û
>W1711617560
MPAO01000009
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAO]
32901
32976
+
Thr
CGT
[ENA]
¡û
>W1711617610
MPAP01000009
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAP]
32936
33011
+
Thr
CGT
[ENA]
¡û
>W1711617660
MPAQ01000010
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAQ]
32821
32896
+
Thr
CGT
[ENA]
¡û
>W1711617727
MPAR01000034
Bacillota
Leuconostoc pseudomesenteroides [MPAR]
2134
2060
-
Thr
CGT
[ENA]
¡û
>W1711617765
MPAS01000027
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAS]
7579
7504
-
Thr
CGT
[ENA]
¡û
>W1711617809
MPAT01000008
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAT]
7836
7761
-
Thr
CGT
[ENA]
¡û
>W1711617864
MPAU01000027
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAU]
7567
7492
-
Thr
CGT
[ENA]
¡û
>W1711618156
MPBA01000036
Bacillota
Leuconostoc pseudomesenteroides [MPBA]
2052
1978
-
Thr
CGT
[ENA]
¡û
>W1711618206
MPBB01000035
Bacillota
Leuconostoc pseudomesenteroides [MPBB]
2053
1979
-
Thr
CGT
[ENA]
¡û
>W1711618256
MPBC01000037
Bacillota
Leuconostoc pseudomesenteroides [MPBC]
2053
1979
-
Thr
CGT
[ENA]
¡û
>W1711618306
MPBD01000035
Bacillota
Leuconostoc pseudomesenteroides [MPBD]
2259
2185
-
Thr
CGT
[ENA]
¡û
>W1711622362
MPEA01000056
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEA]
7713
7638
-
Thr
CGT
[ENA]
¡û
>W1711622407
MPEB01000072
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEB]
7541
7466
-
Thr
CGT
[ENA]
¡û
>W1711622481
MPEC01000086
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEC]
2827
2902
+
Thr
CGT
[ENA]
¡û
>W1711622513
MPED01000009
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPED]
7836
7761
-
Thr
CGT
[ENA]
¡û
>W1711622581
MPEE01000034
Bacillota
Leuconostoc pseudomesenteroides [MPEE]
2389
2315
-
Thr
CGT
[ENA]
¡û
>W1711622609
MPEF01000006
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEF]
7836
7761
-
Thr
CGT
[ENA]
¡û
>W1711622660
MPEG01000009
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEG]
7836
7761
-
Thr
CGT
[ENA]
¡û
>W1711622694
MPEH01000007
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEH]
7836
7761
-
Thr
CGT
[ENA]
¡û
>W1711622767
MPEI01000027
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEI]
7567
7492
-
Thr
CGT
[ENA]
¡û
>W1711622809
MPEJ01000009
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEJ]
7836
7761
-
Thr
CGT
[ENA]
¡û
>W1711624843
MPHN01000032
Bacillota
Leuconostoc pseudomesenteroides [MPHN]
15249
15323
+
Thr
CGT
[ENA]
¡û
>W1711624892
MPHO01000118
Bacillota
Leuconostoc pseudomesenteroides [MPHO]
2942
2868
-
Thr
CGT
[ENA]
¡û
>W1711624939
MPHP01000072
Bacillota
Leuconostoc pseudomesenteroides [MPHP]
2160
2086
-
Thr
CGT
[ENA]
¡û
>W1711624975
MPHQ01000037
Bacillota
Leuconostoc pseudomesenteroides [MPHQ]
2053
1979
-
Thr
CGT
[ENA]
¡û
>W1711625020
MPHR01000049
Bacillota
Leuconostoc pseudomesenteroides [MPHR]
12389
12463
+
Thr
CGT
[ENA]
¡û
>W1711625081
MPHS01000038
Bacillota
Leuconostoc pseudomesenteroides [MPHS]
2134
2060
-
Thr
CGT
[ENA]
¡û
>W1711625138
MPHT01000056
Bacillota
Leuconostoc pseudomesenteroides [MPHT]
4983
5057
+
Thr
CGT
[ENA]
¡û
>W1711625174
MPHU01000029
Bacillota
Leuconostoc pseudomesenteroides [MPHU]
1858
1784
-
Thr
CGT
[ENA]
¡û
>W1711627128
MPLF01000034
Bacillota
Leuconostoc pseudomesenteroides [MPLF]
2623
2549
-
Thr
CGT
[ENA]
¡û
>W1711627176
MPLG01000029
Bacillota
Leuconostoc pseudomesenteroides [MPLG]
15142
15216
+
Thr
CGT
[ENA]
¡û
>W1711627201
MPLH01000037
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLH]
2352
2427
+
Thr
CGT
[ENA]
¡û
>W1711627260
MPLI01000008
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPLI]
33053
33128
+
Thr
CGT
[ENA]
¡û
>W1711627286
MPLJ01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLJ]
43017
43092
+
Thr
CGT
[ENA]
¡û
>W1711627364
MPLK01000033
Bacillota
Leuconostoc pseudomesenteroides [MPLK]
2052
1978
-
Thr
CGT
[ENA]
¡û
>W1711627470
MPLM01000041
Bacillota
Leuconostoc pseudomesenteroides [MPLM]
2052
1978
-
Thr
CGT
[ENA]
¡û
>W1711627570
MPLO01000008
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLO]
63176
63101
-
Thr
CGT
[ENA]
¡û
>W1711627585
MPLP01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLP]
308274
308199
-
Thr
CGT
[ENA]
¡û
>W1711627656
MPLQ01000012
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLQ]
9806
9731
-
Thr
CGT
[ENA]
¡û
>W1711627694
MPLR01000007
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLR]
9679
9604
-
Thr
CGT
[ENA]
¡û
>W1711627777
MPLS01000031
Bacillota
Leuconostoc pseudomesenteroides [MPLS]
2824
2750
-
Thr
CGT
[ENA]
¡û
>C171019396
CP013016
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides DRC0211 [CP013016]
362583
362658
+
Thr
CGT
-
¡û
>C171032513
CP014611
Bacillota
Leuconostoc mesenteroides subsp. jonggajibkimchii DRC1506 [CP014611]
362399
362474
+
Thr
CGT
-
¡û
>C171038877
CP015442
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD1710 [CP015442]
394383
394458
+
Thr
CGT
-
¡û
>C171111868
CP020731
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides FM06 [CP020731]
484481
484406
-
Thr
CGT
-
¡û
>C012134
CP000414
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [CP000414]
367671
367746
+
Thr
CGT
[Ensembl]
¡û
>W141075609
ATAZ01000052
Bacillota
Leuconostoc mesenteroides subsp. cremoris TIFN8 [ATAZ]
7841
7766
-
Thr
CGT
[ENA]
¡û
>W141244918
CAKV01000093
Bacillota
Leuconostoc pseudomesenteroides 4882 [CAKV]
2395
2321
-
Thr
CGT
[ENA]
¡û
>W141292141
JAUI01000035
Bacillota
Leuconostoc pseudomesenteroides 1159 [JAUI]
15076
15150
+
Thr
CGT
[ENA]
¡û
>W141292168
JAUJ01000007
Bacillota
Leuconostoc mesenteroides subsp. cremoris T26 [JAUJ]
32847
32922
+
Thr
CGT
[ENA]
¡û
>WENV183511492
OMJG01000450
[OMJG] food metagenome; Cotija cheese
30311
30238
-
Thr
CGT
[ENA]
¢þ
>W141402121
JDVA01000040
Bacillota
Leuconostoc pseudomesenteroides PS12 [JDVA]
1991
1917
-
Thr
CGT
[ENA]
¡û
>C181003821
AP017936
Bacillota
Leuconostoc mesenteroides LK-151 [AP017936]
597952
598025
+
Thr
CGT
-
¡û
>C181054917
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
362097
362170
+
Thr
CGT
-
¡û
>W09127274
ACKV01000086
Bacillota
Leuconostoc mesenteroides subsp. cremoris ATCC 19254 [ACKV]
7441
7366
-
Thr
CGT
[ENA]
¡û
>C191019096
CP021491
Bacillota
Leuconostoc mesenteroides WiKim33 [CP021491]
778174
778101
-
Thr
CGT
-
¡û
>C191135401
CP035139
Bacillota
Leuconostoc mesenteroides SRCM103356 [CP035139]
362097
362170
+
Thr
CGT
-
¡û
>C191137956
CP035271
Bacillota
Leuconostoc mesenteroides SRCM103453 [CP035271]
362098
362171
+
Thr
CGT
-
¡û
>C191146239
CP035746
Bacillota
Leuconostoc mesenteroides SRCM103460 [CP035746]
362093
362166
+
Thr
CGT
-
¡û
>W1910181173
BJLS01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides NBRC 3832 [BJLS]
170304
170377
+
Thr
CGT
[ENA]
¡û
>C141000445
CP000574
Bacillota
Leuconostoc mesenteroides KFRI-MG [CP000574]
362185
362260
+
Thr
CGT
[Ensembl]
¡û
>W1910810814
MUXD01000007
Bacillota
Leuconostoc mesenteroides YL48 [MUXD]
2497
2424
-
Thr
CGT
[ENA]
¡û
>W1910870972
NCWT01000005
Bacillota
Leuconostoc mesenteroides OG2 [NCWT]
33424
33351
-
Thr
CGT
[ENA]
¡û
>W1911533616
OKQW01000001
Bacillota
Leuconostoc mesenteroides CECT 9268 [OKQW]
634764
634691
-
Thr
CGT
[ENA]
¡û
>W1911533937
OKRL01000001
Bacillota
Leuconostoc mesenteroides CECT 9217 [OKRL]
214323
214396
+
Thr
CGT
[ENA]
¡û
>W1911539174
OMPP01000001
Bacillota
Leuconostoc mesenteroides CECT 9266 [OMPP]
214321
214394
+
Thr
CGT
[ENA]
¡û
>W1810705443
QMJH01000020
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_608 [QMJH]
30816
30743
-
Thr
CGT
[ENA]
¡û
>W1810705470
QMJI01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_609 [QMJI]
33561
33488
-
Thr
CGT
[ENA]
¡û
>W1810705519
QMJJ01000007
Bacillota
Leuconostoc pseudomesenteroides KMB_610 [QMJJ]
65430
65504
+
Thr
CGT
[ENA]
¡û
>W1810705550
QMJK01000007
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_611 [QMJK]
35
108
+
Thr
CGT
[ENA]
¡û
>C151089409
CP012009
Bacillota
Leuconostoc mesenteroides subsp. dextranicum DSM 20484 [CP012009]
1073730
1073805
+
Thr
CGT
[Ensembl]
¡û
>W1510013870
BBPK01000006
Bacillota
Leuconostoc mesenteroides Wikim17 [BBPK]
138731
138656
-
Thr
CGT
[ENA]
¡û
>WENV11100272
AEKF01000006
Food metagenome, Jonggazip commercial cabbage kimchi
82494
82569
+
Thr
CGT
[ENA]
¡û
>W11142013
AEOQ01000882
Bacillota
Leuconostoc pseudomesenteroides KCTC 3652 [AEOQ]
33085
33159
+
Thr
CGT
[ENA]
¡û
>W1511585379
LAYN01000001
Bacillota
Leuconostoc mesenteroides subsp. dextranicum LbE15 [LAYN]
30901
30826
-
Thr
CGT
[ENA]
¡û
>W1511585716
LAYU01000004
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides LbE16 [LAYU]
131682
131757
+
Thr
CGT
[ENA]
¡û
>W1511585745
LAYV01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris LbT16 [LAYV]
236863
236788
-
Thr
CGT
[ENA]
¡û
>C121005801
CP003101
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides J18 [CP003101]
362343
362418
+
Thr
CGT
[Ensembl]
¡û
>C161074399
CP014610
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD3749 [CP014610]
362211
362286
+
Thr
CGT
-
¡û
>W1610061374
BCMO01000001
Bacillota
Leuconostoc mesenteroides [BCMO]
95494
95569
+
Thr
CGT
[ENA]
¡û
>W1610061436
BCMP01000021
Bacillota
Leuconostoc mesenteroides [BCMP]
93984
94059
+
Thr
CGT
[ENA]
¡û
>W1610747269
LMXE01000002
Bacillota
Leuconostoc mesenteroides [LMXE]
212860
212935
+
Thr
CGT
[ENA]
¡û
>W1710059039
BCMO01000001
Bacillota
Leuconostoc mesenteroides [BCMO]
95494
95569
+
Thr
CGT
[ENA]
¡û
>W1710059101
BCMP01000021
Bacillota
Leuconostoc mesenteroides [BCMP]
93984
94059
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK