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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Food metagenome, Jonggazip commercial cabbage kimchi
Anticodon = GGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463057 (78 seq.)
>W1711068975
LSFF01000007
Bacillota
Latilactobacillus sakei [LSFF]
98517
98445
-
Thr
GGT
[ENA]
¡û
>W1711484740
MKDC01000029
Bacillota
Latilactobacillus sakei [MKDC]
18586
18514
-
Thr
GGT
[ENA]
¡û
>W1711484777
MKDD01000008
Bacillota
Latilactobacillus sakei [MKDD]
118184
118112
-
Thr
GGT
[ENA]
¡û
>W1711484850
MKDE01000014
Bacillota
Latilactobacillus sakei [MKDE]
17671
17743
+
Thr
GGT
[ENA]
¡û
>W1711484947
MKDG01000041
Bacillota
Latilactobacillus curvatus [MKDG]
16472
16544
+
Thr
GGT
[ENA]
¡û
>W1711485013
MKDI01000010
Bacillota
Latilactobacillus sakei [MKDI]
3279
3351
+
Thr
GGT
[ENA]
¡û
>W1711485037
MKDJ01000002
Bacillota
Latilactobacillus sakei [MKDJ]
116918
116846
-
Thr
GGT
[ENA]
¡û
>W1711485238
MKDR01000009
Bacillota
Latilactobacillus curvatus [MKDR]
66700
66628
-
Thr
GGT
[ENA]
¡û
>W1711487503
MKGB01000013
Bacillota
Latilactobacillus sakei [MKGB]
60501
60429
-
Thr
GGT
[ENA]
¡û
>W1711487557
MKGC01000074
Bacillota
Latilactobacillus curvatus [MKGC]
2502
2430
-
Thr
GGT
[ENA]
¡û
>W1711487588
MKGD01000076
Bacillota
Latilactobacillus curvatus [MKGD]
2502
2430
-
Thr
GGT
[ENA]
¡û
>C171057529
CP017124
Bacillota
Latilactobacillus curvatus WiKim38 [CP017124]
258497
258569
+
Thr
GGT
-
¡û
>W131196437
ASTI01000007
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
17576
17648
+
Thr
GGT
[ENA]
¡û
>C012602
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
328601
328673
+
Thr
GGT
[Ensembl]
¡û
>W141228359
BALW01000013
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
17558
17630
+
Thr
GGT
[ENA]
¡û
>W141229041
BAMJ01000009
Bacillota
Latilactobacillus fuchuensis JCM 11249 [BAMJ]
23702
23774
+
Thr
GGT
[ENA]
¡û
>WENV182539998
OIXV01045963
[OIXV] human gut metagenome; faeces
972
900
-
Thr
GGT
[ENA]
¢þ
>WENV183201365
OLPW01024862
[OLPW] human gut metagenome; faeces
727
799
+
Thr
GGT
[ENA]
¢þ
>C181003630
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
152895
152823
-
Thr
GGT
-
¡û
>C181003683
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1581276
1581204
-
Thr
GGT
-
¡û
>C181044593
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
325549
325621
+
Thr
GGT
-
¡û
>C181066064
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
330368
330440
+
Thr
GGT
-
¡û
>C181066129
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
324206
324278
+
Thr
GGT
-
¡û
>C181071493
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
1864455
1864527
+
Thr
GGT
-
¡û
>C181113633
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1203223
1203295
+
Thr
GGT
-
¡û
>C181114091
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
765122
765050
-
Thr
GGT
-
¡û
>C181123513
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
364359
364431
+
Thr
GGT
-
¡û
>C181186061
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
258172
258244
+
Thr
GGT
-
¡û
>C181194805
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
297120
297192
+
Thr
GGT
-
¡û
>C181227403
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
349800
349872
+
Thr
GGT
-
¡û
>C181227460
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
365678
365750
+
Thr
GGT
-
¡û
>C181227522
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
359455
359527
+
Thr
GGT
-
¡û
>C181227583
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
369210
369282
+
Thr
GGT
-
¡û
>C181227644
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
350136
350208
+
Thr
GGT
-
¡û
>W09127624
ACLD01000094
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
79481
79409
-
Thr
GGT
[ENA]
¡û
>C191004177
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
316420
316492
+
Thr
GGT
-
¡û
>C191035524
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
1715203
1715131
-
Thr
GGT
-
¡û
>C191040512
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
1282034
1281962
-
Thr
GGT
-
¡û
>C191092609
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
711796
711868
+
Thr
GGT
-
¡û
>C191092672
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
397478
397550
+
Thr
GGT
-
¡û
>C191092792
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
247622
247694
+
Thr
GGT
-
¡û
>C191093003
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
1449245
1449173
-
Thr
GGT
-
¡û
>C191134853
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
329822
329894
+
Thr
GGT
-
¡û
>W1910180942
BJLN01000004
Bacillota
Latilactobacillus sakei NBRC 3541 [BJLN]
118399
118327
-
Thr
GGT
[ENA]
¡û
>W1910184434
BJOQ01000004
Bacillota
Latilactobacillus curvatus NBRC 15884 [BJOQ]
59111
59039
-
Thr
GGT
[ENA]
¡û
>W1910471967
FXDK01000028
Bacillota
Latilactobacillus curvatus [FXDK]
108814
108742
-
Thr
GGT
[ENA]
¡û
>W1910751912
MKDL01000051
Bacillota
Latilactobacillus sakei RI-493 [MKDL]
3906
3978
+
Thr
GGT
[ENA]
¡û
>W1910751926
MKDM01000009
Bacillota
Latilactobacillus sakei RI-496 [MKDM]
17687
17759
+
Thr
GGT
[ENA]
¡û
>W1910751959
MKDN01000013
Bacillota
Latilactobacillus sakei RI-499 [MKDN]
79644
79572
-
Thr
GGT
[ENA]
¡û
>W1910752023
MKDO01000014
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
17619
17691
+
Thr
GGT
[ENA]
¡û
>W1910752998
MKGG01000009
Bacillota
Latilactobacillus sakei RI-516 [MKGG]
3792
3864
+
Thr
GGT
[ENA]
¡û
>W1910753048
MKGH01000037
Bacillota
Latilactobacillus sakei RI-517 [MKGH]
90815
90743
-
Thr
GGT
[ENA]
¡û
>W1911493393
OBHJ01000015
Bacillota
Latilactobacillus sakei J18 [OBHJ]
116616
116544
-
Thr
GGT
[ENA]
¡û
>W1911493439
OBHK01000031
Bacillota
Latilactobacillus sakei J160x1 [OBHK]
17581
17653
+
Thr
GGT
[ENA]
¡û
>W1911493448
OBHL01000005
Bacillota
Latilactobacillus sakei J156 [OBHL]
3872
3944
+
Thr
GGT
[ENA]
¡û
>W1911493576
OBHN01000038
Bacillota
Latilactobacillus sakei J112 [OBHN]
17574
17646
+
Thr
GGT
[ENA]
¡û
>W1911532472
OGVC01000003
Bacillota
Latilactobacillus fuchuensis MFPC41A2801 [OGVC]
23791
23863
+
Thr
GGT
[ENA]
¡û
>W1911533895
OKRC01000007
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
117161
117089
-
Thr
GGT
[ENA]
¡û
>W1911551500
OVTU01000004
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
116874
116802
-
Thr
GGT
[ENA]
¡û
>W1911631430
PUFE01000001
Bacillota
Latilactobacillus sakei subsp. sakei ATCC 15521 [PUFE]
37351
37279
-
Thr
GGT
[ENA]
¡û
>W1911706044
QOSE01000007
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
3996
4068
+
Thr
GGT
[ENA]
¡û
>WENV11100319
AEKF01000056
Food metagenome, Jonggazip commercial cabbage kimchi
12419
12347
-
Thr
GGT
[ENA]
¡û
>W1511344717
JRFY01000049
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
18861
18789
-
Thr
GGT
[ENA]
¡û
>W1511402272
JTJV01000007
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
25472
25544
+
Thr
GGT
[ENA]
¡û
>C161093475
CP016028
Bacillota
Latilactobacillus curvatus FBA2 [CP016028]
1698976
1698904
-
Thr
GGT
-
¡û
>C161100166
CP016602
Bacillota
Latilactobacillus curvatus WiKim52 [CP016602]
713738
713810
+
Thr
GGT
[Ensembl]
¡û
>W121008302
AGBU01000037
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
16296
16224
-
Thr
GGT
[ENA]
¡û
>W1610034075
AZDL01000046
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
240
168
-
Thr
GGT
[ENA]
¡û
>W1610034165
AZDN01000010
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
36516
36444
-
Thr
GGT
[ENA]
¡û
>W1610035934
AZEX01000035
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
23749
23821
+
Thr
GGT
[ENA]
¡û
>W1610036373
AZFG01000024
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
17732
17804
+
Thr
GGT
[ENA]
¡û
>W1610045558
BBBQ01000006
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
16266
16338
+
Thr
GGT
[ENA]
¡û
>W1610909545
LSFF01000007
Bacillota
Latilactobacillus sakei [LSFF]
98517
98445
-
Thr
GGT
[ENA]
¡û
>W1710031202
AZDL01000046
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
240
168
-
Thr
GGT
[ENA]
¡û
>W1710031292
AZDN01000010
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
36516
36444
-
Thr
GGT
[ENA]
¡û
>W1710032973
AZEX01000035
Bacillota
Latilactobacillus fuchuensis DSM 14340 = JCM 11249 [AZEX]
23749
23821
+
Thr
GGT
[ENA]
¡û
>W1710033412
AZFG01000024
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
17732
17804
+
Thr
GGT
[ENA]
¡û
>W1710042399
BBBQ01000006
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
16266
16338
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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