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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Food metagenome, Jonggazip commercial cabbage kimchi
Anticodon = GTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481285 (52 seq.)
>W1711069011
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
1505
1579
+
His
GTG
[ENA]
¡û
>W131196452
ASTI01000008
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
1427
1501
+
His
GTG
[ENA]
¡û
>W1711484756
MKDC01000037
Bacillota
Latilactobacillus sakei [MKDC]
1426
1500
+
His
GTG
[ENA]
¡û
>W1711484809
MKDD01000022
Bacillota
Latilactobacillus sakei [MKDD]
17504
17430
-
His
GTG
[ENA]
¡û
>W1711484843
MKDE01000010
Bacillota
Latilactobacillus sakei [MKDE]
2144
2218
+
His
GTG
[ENA]
¡û
>W1711485009
MKDI01000009
Bacillota
Latilactobacillus sakei [MKDI]
25983
25909
-
His
GTG
[ENA]
¡û
>W1711485060
MKDJ01000020
Bacillota
Latilactobacillus sakei [MKDJ]
950
1024
+
His
GTG
[ENA]
¡û
>W1711487525
MKGB01000033
Bacillota
Latilactobacillus sakei [MKGB]
1459
1533
+
His
GTG
[ENA]
¡û
>C012625
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
452583
452655
+
His
GTG
[Ensembl]
¡û
>W141228374
BALW01000016
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
26164
26090
-
His
GTG
[ENA]
¡û
>C181003655
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
26174
26100
-
His
GTG
-
¡û
>C181003708
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1453357
1453283
-
His
GTG
-
¡û
>C181044616
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
452268
452342
+
His
GTG
-
¡û
>C181071479
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
5347
5421
+
His
GTG
-
¡û
>C181102765
CP024610
Bacillota
Lactobacillus terrae NIBRBAC000499792 [CP024610]
1326205
1326132
-
His
GTG
-
¡û
>C181113658
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1327286
1327360
+
His
GTG
-
¡û
>C181114116
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
639391
639317
-
His
GTG
-
¡û
>C181123538
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
492628
492702
+
His
GTG
-
¡û
>C181227426
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
473386
473460
+
His
GTG
-
¡û
>C181227482
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
491258
491332
+
His
GTG
-
¡û
>C181227545
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
484741
484815
+
His
GTG
-
¡û
>C181227606
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
494795
494869
+
His
GTG
-
¡û
>C181227667
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
473749
473823
+
His
GTG
-
¡û
>C191092634
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
835832
835906
+
His
GTG
-
¡û
>C191092697
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
521513
521587
+
His
GTG
-
¡û
>C191092817
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
371657
371731
+
His
GTG
-
¡û
>C191093028
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
1325209
1325135
-
His
GTG
-
¡û
>W09127629
ACLD01000109
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
223
297
+
His
GTG
[ENA]
¡û
>W1910180957
BJLN01000019
Bacillota
Latilactobacillus sakei NBRC 3541 [BJLN]
26175
26101
-
His
GTG
[ENA]
¡û
>W1910751908
MKDL01000043
Bacillota
Latilactobacillus sakei RI-493 [MKDL]
25583
25509
-
His
GTG
[ENA]
¡û
>W1910751948
MKDM01000022
Bacillota
Latilactobacillus sakei RI-496 [MKDM]
4221
4147
-
His
GTG
[ENA]
¡û
>W1910751982
MKDN01000033
Bacillota
Latilactobacillus sakei RI-499 [MKDN]
1128
1202
+
His
GTG
[ENA]
¡û
>W1910752014
MKDO01000010
Bacillota
Latilactobacillus sakei RI-500 [MKDO]
26208
26134
-
His
GTG
[ENA]
¡û
>W1910753032
MKGG01000056
Bacillota
Latilactobacillus sakei RI-516 [MKGG]
1425
1499
+
His
GTG
[ENA]
¡û
>W1910753061
MKGH01000042
Bacillota
Latilactobacillus sakei RI-517 [MKGH]
25222
25148
-
His
GTG
[ENA]
¡û
>W1911493398
OBHJ01000025
Bacillota
Latilactobacillus sakei J18 [OBHJ]
320
394
+
His
GTG
[ENA]
¡û
>W1911493443
OBHK01000032
Bacillota
Latilactobacillus sakei J160x1 [OBHK]
320
394
+
His
GTG
[ENA]
¡û
>W1911493464
OBHL01000008
Bacillota
Latilactobacillus sakei J156 [OBHL]
1504
1578
+
His
GTG
[ENA]
¡û
>W1911493548
OBHN01000002
Bacillota
Latilactobacillus sakei J112 [OBHN]
320
394
+
His
GTG
[ENA]
¡û
>W1911533912
OKRC01000014
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
26302
26228
-
His
GTG
[ENA]
¡û
>W1911551516
OVTU01000006
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
1533
1607
+
His
GTG
[ENA]
¡û
>W1911631448
PUFE01000016
Bacillota
Latilactobacillus sakei subsp. sakei ATCC 15521 [PUFE]
27936
27862
-
His
GTG
[ENA]
¡û
>W1911706073
QOSE01000022
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
26156
26082
-
His
GTG
[ENA]
¡û
>WENV11100312
AEKF01000039
Food metagenome, Jonggazip commercial cabbage kimchi
1406
1480
+
His
GTG
[ENA]
¡û
>W1511344713
JRFY01000045
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
322
396
+
His
GTG
[ENA]
¡û
>W1610031750
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
19470
19396
-
His
GTG
[ENA]
¡û
>W1610034168
AZDN01000015
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
26159
26085
-
His
GTG
[ENA]
¡û
>W1610036417
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
1446
1520
+
His
GTG
[ENA]
¡û
>W1610909581
LSFF01000020
Bacillota
Latilactobacillus sakei [LSFF]
1505
1579
+
His
GTG
[ENA]
¡û
>W1710028677
AYZB01000052
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
19470
19396
-
His
GTG
[ENA]
¡û
>W1710031295
AZDN01000015
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
26159
26085
-
His
GTG
[ENA]
¡û
>W1710033456
AZFG01000065
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
1446
1520
+
His
GTG
[ENA]
¡û
Identical group No.485633 (9 seq.)
>C181143160
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
987078
987151
+
His
GTG
-
¡û
>W1910583212
JXJU01000007
Bacillota
Lactococcus fujiensis JCM 16395 [JXJU]
222
296
+
His
GTG
[ENA]
¡û
>WENV11100338
AEKF01000082
Food metagenome, Jonggazip commercial cabbage kimchi
1522
1449
-
His
GTG
[ENA]
¡û
>C11123744
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
922692
922765
+
His
GTG
[Ensembl]
¡û
>W1610044310
BBAL01000008
Bacillota
Lactococcus fujiensis JCM 16395 [BBAL]
119468
119394
-
His
GTG
[ENA]
¡û
>W121082009
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
95432
95505
+
His
GTG
[ENA]
¡û
>W1610528862
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
58674
58747
+
His
GTG
[ENA]
¡û
>W1710041470
BBAL01000008
Bacillota
Lactococcus fujiensis JCM 16395 [BBAL]
119468
119394
-
His
GTG
[ENA]
¡û
>W1710630452
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
58674
58747
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK