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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Food metagenome, Jonggazip commercial cabbage kimchi
Anticodon = TAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157697 (6 seq.)
>C181143153
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
939756
939840
+
Leu
TAG
-
¡û
>WENV11100325
AEKF01000075
Food metagenome, Jonggazip commercial cabbage kimchi
1387
1471
+
Leu
TAG
[ENA]
¡û
>C11123737
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
875269
875353
+
Leu
TAG
[Ensembl]
¡û
>W121082002
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
47995
48079
+
Leu
TAG
[ENA]
¡û
>W1610528858
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
12924
13008
+
Leu
TAG
[ENA]
¡û
>W1710630448
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
12924
13008
+
Leu
TAG
[ENA]
¡û
Identical group No.180024 (73 seq.)
>W1710885360
LMXE01000006
Bacillota
Leuconostoc mesenteroides [LMXE]
171662
171579
-
Leu
TAG
[ENA]
¡û
>W1711617467
MPAM01000014
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAM]
22875
22958
+
Leu
TAG
[ENA]
¡û
>W1711617513
MPAN01000010
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAN]
22875
22958
+
Leu
TAG
[ENA]
¡û
>W1711617563
MPAO01000012
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAO]
22722
22805
+
Leu
TAG
[ENA]
¡û
>W1711617615
MPAP01000013
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAP]
23003
23086
+
Leu
TAG
[ENA]
¡û
>W1711617666
MPAQ01000014
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAQ]
23003
23086
+
Leu
TAG
[ENA]
¡û
>W1711617759
MPAS01000013
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAS]
9272
9189
-
Leu
TAG
[ENA]
¡û
>W1711617814
MPAT01000014
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAT]
22736
22819
+
Leu
TAG
[ENA]
¡û
>W1711617858
MPAU01000013
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAU]
9289
9206
-
Leu
TAG
[ENA]
¡û
>W1711622367
MPEA01000066
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEA]
9517
9434
-
Leu
TAG
[ENA]
¡û
>W1711622422
MPEB01000090
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEB]
9473
9390
-
Leu
TAG
[ENA]
¡û
>W1711622468
MPEC01000046
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEC]
6178
6261
+
Leu
TAG
[ENA]
¡û
>W1711622518
MPED01000012
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPED]
22736
22819
+
Leu
TAG
[ENA]
¡û
>W1711622612
MPEF01000010
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEF]
22736
22819
+
Leu
TAG
[ENA]
¡û
>W1711622664
MPEG01000012
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEG]
22736
22819
+
Leu
TAG
[ENA]
¡û
>W1711622701
MPEH01000012
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEH]
22713
22796
+
Leu
TAG
[ENA]
¡û
>W1711622758
MPEI01000011
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEI]
22889
22972
+
Leu
TAG
[ENA]
¡û
>W1711622814
MPEJ01000012
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEJ]
22736
22819
+
Leu
TAG
[ENA]
¡û
>W1711627224
MPLH01000216
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLH]
1166
1083
-
Leu
TAG
[ENA]
¡û
>W1711627267
MPLI01000013
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPLI]
22698
22781
+
Leu
TAG
[ENA]
¡û
>W1711627301
MPLJ01000010
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLJ]
22848
22765
-
Leu
TAG
[ENA]
¡û
>W1711627538
MPLO01000003
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLO]
26981
26898
-
Leu
TAG
[ENA]
¡û
>W1711627625
MPLP01000011
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLP]
26867
26784
-
Leu
TAG
[ENA]
¡û
>W1711627658
MPLQ01000013
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLQ]
28713
28796
+
Leu
TAG
[ENA]
¡û
>W1711627720
MPLR01000016
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLR]
14180
14263
+
Leu
TAG
[ENA]
¡û
>C171019407
CP013016
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides DRC0211 [CP013016]
1711646
1711563
-
Leu
TAG
-
¡û
>C171032524
CP014611
Bacillota
Leuconostoc mesenteroides subsp. jonggajibkimchii DRC1506 [CP014611]
1685380
1685297
-
Leu
TAG
-
¡û
>C171037203
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
1805163
1805080
-
Leu
TAG
-
¡û
>C171038888
CP015442
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD1710 [CP015442]
1920365
1920282
-
Leu
TAG
-
¡û
>C171111817
CP020731
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides FM06 [CP020731]
1060994
1061077
+
Leu
TAG
-
¡û
>C012145
CP000414
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [CP000414]
1834795
1834714
-
Leu
TAG
[Ensembl]
¡û
>W141075620
ATAZ01000063
Bacillota
Leuconostoc mesenteroides subsp. cremoris TIFN8 [ATAZ]
8589
8506
-
Leu
TAG
[ENA]
¡û
>W141292189
JAUJ01000119
Bacillota
Leuconostoc mesenteroides subsp. cremoris T26 [JAUJ]
9225
9142
-
Leu
TAG
[ENA]
¡û
>WENV183511476
OMJG01000419
[OMJG] food metagenome; Cotija cheese
27825
27742
-
Leu
TAG
[ENA]
¢þ
>C181003783
AP017935
Bacillota
Leuconostoc suionicum LT-38 [AP017935]
25601
25518
-
Leu
TAG
-
¡û
>C181003847
AP017936
Bacillota
Leuconostoc mesenteroides LK-151 [AP017936]
26614
26531
-
Leu
TAG
-
¡û
>C181054928
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
1794007
1793924
-
Leu
TAG
-
¡û
>C191019045
CP021491
Bacillota
Leuconostoc mesenteroides WiKim33 [CP021491]
1348755
1348838
+
Leu
TAG
-
¡û
>C191135412
CP035139
Bacillota
Leuconostoc mesenteroides SRCM103356 [CP035139]
1724396
1724313
-
Leu
TAG
-
¡û
>C191137967
CP035271
Bacillota
Leuconostoc mesenteroides SRCM103453 [CP035271]
1848901
1848818
-
Leu
TAG
-
¡û
>C191146250
CP035746
Bacillota
Leuconostoc mesenteroides SRCM103460 [CP035746]
1772439
1772356
-
Leu
TAG
-
¡û
>W09100498
AABH02000020
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [AABH]
1661
1744
+
Leu
TAG
[ENA]
¡û
>W09127243
ACKV01000011
Bacillota
Leuconostoc mesenteroides subsp. cremoris ATCC 19254 [ACKV]
9153
9070
-
Leu
TAG
[ENA]
¡û
>W1910181186
BJLS01000009
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides NBRC 3832 [BJLS]
26651
26568
-
Leu
TAG
[ENA]
¡û
>C141000456
CP000574
Bacillota
Leuconostoc mesenteroides KFRI-MG [CP000574]
1688025
1687942
-
Leu
TAG
[Ensembl]
¡û
>W1910810822
MUXD01000020
Bacillota
Leuconostoc mesenteroides YL48 [MUXD]
27180
27097
-
Leu
TAG
[ENA]
¡û
>W1910870980
NCWT01000010
Bacillota
Leuconostoc mesenteroides OG2 [NCWT]
25144
25227
+
Leu
TAG
[ENA]
¡û
>W1911533354
OKQR01000002
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8486 [OKQR]
241353
241436
+
Leu
TAG
[ENA]
¡û
>W1911533505
OKQU01000002
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 9216 [OKQU]
241353
241436
+
Leu
TAG
[ENA]
¡û
>W1911533630
OKQW01000004
Bacillota
Leuconostoc mesenteroides CECT 9268 [OKQW]
226130
226213
+
Leu
TAG
[ENA]
¡û
>W1911533956
OKRL01000002
Bacillota
Leuconostoc mesenteroides CECT 9217 [OKRL]
225825
225908
+
Leu
TAG
[ENA]
¡û
>W1911538496
OMON01000002
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8484 [OMON]
241353
241436
+
Leu
TAG
[ENA]
¡û
>W1911539193
OMPP01000004
Bacillota
Leuconostoc mesenteroides CECT 9266 [OMPP]
226130
226213
+
Leu
TAG
[ENA]
¡û
>W1810573490
QEKT01000007
Bacillota
Convivina intestini DSM 28795 [QEKT]
66275
66359
+
Leu
TAG
[ENA]
¡û
>W1810705438
QMJH01000016
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_608 [QMJH]
14356
14439
+
Leu
TAG
[ENA]
¡û
>W1810705483
QMJI01000012
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_609 [QMJI]
12505
12422
-
Leu
TAG
[ENA]
¡û
>W1810705566
QMJK01000013
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_611 [QMJK]
26887
26804
-
Leu
TAG
[ENA]
¡û
>C151089425
CP012009
Bacillota
Leuconostoc mesenteroides subsp. dextranicum DSM 20484 [CP012009]
525815
525732
-
Leu
TAG
[Ensembl]
¡û
>W1510013865
BBPK01000005
Bacillota
Leuconostoc mesenteroides Wikim17 [BBPK]
31580
31663
+
Leu
TAG
[ENA]
¡û
>WENV11100279
AEKF01000007
Food metagenome, Jonggazip commercial cabbage kimchi
22719
22636
-
Leu
TAG
[ENA]
¡û
>W1511346279
JRGZ01000005
Bacillota
Leuconostoc mesenteroides P45 [JRGZ]
28256
28173
-
Leu
TAG
[ENA]
¡û
>W11141991
AEOQ01000061
Bacillota
Leuconostoc pseudomesenteroides KCTC 3652 [AEOQ]
514
597
+
Leu
TAG
[ENA]
¡û
>W1511585405
LAYN01000011
Bacillota
Leuconostoc mesenteroides subsp. dextranicum LbE15 [LAYN]
49044
49127
+
Leu
TAG
[ENA]
¡û
>W1511585721
LAYU01000007
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides LbE16 [LAYU]
26714
26631
-
Leu
TAG
[ENA]
¡û
>W1511585775
LAYV01000008
Bacillota
Leuconostoc mesenteroides subsp. cremoris LbT16 [LAYV]
23037
22954
-
Leu
TAG
[ENA]
¡û
>C121005812
CP003101
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides J18 [CP003101]
1684023
1683940
-
Leu
TAG
[Ensembl]
¡û
>C161074410
CP014610
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD3749 [CP014610]
1778340
1778257
-
Leu
TAG
-
¡û
>W1610061400
BCMO01000021
Bacillota
Leuconostoc mesenteroides [BCMO]
7285
7368
+
Leu
TAG
[ENA]
¡û
>W1610061445
BCMP01000029
Bacillota
Leuconostoc mesenteroides [BCMP]
26669
26586
-
Leu
TAG
[ENA]
¡û
>W1610747286
LMXE01000006
Bacillota
Leuconostoc mesenteroides [LMXE]
171662
171579
-
Leu
TAG
[ENA]
¡û
>W1710059065
BCMO01000021
Bacillota
Leuconostoc mesenteroides [BCMO]
7285
7368
+
Leu
TAG
[ENA]
¡û
>W1710059110
BCMP01000029
Bacillota
Leuconostoc mesenteroides [BCMP]
26669
26586
-
Leu
TAG
[ENA]
¡û
>W1710511019
FMYJ01000020
Bacillota
Leuconostocaceae bacterium R-53105 [FMYJ]
227
143
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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