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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Food metagenome, Jonggazip commercial cabbage kimchi
Anticodon = TGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483190 (16 seq.)
>C171030956
CP014332
Bacillota
Weissella jogaejeotgali FOL01 [CP014332]
1534325
1534249
-
Thr
TGT
-
¡û
>W141236481
BBIK01000006
Bacillota
Weissella hellenica [BBIK]
620
696
+
Thr
TGT
[ENA]
¡û
>C181082761
CP023501
Bacillota
Weissella paramesenteroides FDAARGOS_414 [CP023501]
293476
293551
+
Thr
TGT
-
¡û
>C181143169
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
1250830
1250904
+
Thr
TGT
-
¡û
>W09127221
ACKU01000016
Bacillota
Weissella paramesenteroides ATCC 33313 [ACKU]
754
678
-
Thr
TGT
[ENA]
¡û
>W1910177457
BJDT01000004
Bacillota
Weissella sagaensis X0750 [BJDT]
182917
182842
-
Thr
TGT
[ENA]
¡û
>W1910177882
BJEC01000009
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
87553
87478
-
Thr
TGT
[ENA]
¡û
>W1910178013
BJEE01000004
Bacillota
Weissella bombi DSM 28794 [BJEE]
549
624
+
Thr
TGT
[ENA]
¡û
>W1810784776
QRAY01000010
Bacillota
Weissella thailandensis KCTC 3751 [QRAY]
87316
87241
-
Thr
TGT
[ENA]
¡û
>WENV11100342
AEKF01000096
Food metagenome, Jonggazip commercial cabbage kimchi
377
451
+
Thr
TGT
[ENA]
¡û
>C11123753
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
1173437
1173511
+
Thr
TGT
[Ensembl]
¡û
>W121082020
AKGG01000005
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
244578
244652
+
Thr
TGT
[ENA]
¡û
>W1610514793
FMAO01000003
Bacillota
Weissella bombi [FMAO]
128789
128713
-
Thr
TGT
[ENA]
¡û
>W1610515273
FMAW01000026
Bacillota
Weissella hellenica [FMAW]
146
222
+
Thr
TGT
[ENA]
¡û
>W1710500483
FMAO01000003
Bacillota
Weissella bombi [FMAO]
128789
128713
-
Thr
TGT
[ENA]
¡û
>W1710500963
FMAW01000026
Bacillota
Weissella hellenica [FMAW]
146
222
+
Thr
TGT
[ENA]
¡û
Identical group No.490231 (1 seq.)
>WENV11100263
AEKF01000005
Food metagenome, Jonggazip commercial cabbage kimchi
117859
117933
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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