tRNA genes clustered and arranged according to each identical group

Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)

Anticodon = CAA

HIT: 6 Group(s).
Download Sequence Representative sequence of each cluster
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Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.122087 (32 seq.)
>W141066908 ARYK01000005 Alphaproteobacteria Hyphomonas johnsonii MHS-2 [ARYK] 45371 45457 + Leu CAA [ENA] ¡û
>W141066947 ARYL01000024 Alphaproteobacteria Hyphomonas oceanitis SCH89 [ARYL] 63019 63105 + Leu CAA [ENA] ¡û
>W141136127 AWFG01000001 Alphaproteobacteria Hyphomonas chukchiensis BH-BN04-4 [AWFG] 499116 499202 + Leu CAA [ENA] ¡û
>W141136234 AWFI01000015 Alphaproteobacteria Hyphomonas sp. L-53-1-40 [AWFI] 257209 257295 + Leu CAA [ENA] ¡û
>WENV183062447 OLID01013070 [OLID] seawater metagenome; Sea water 143 229 + Leu CAA [ENA] ¢þ
>WENV183615128 OOEA01067744 [OOEA] marine metagenome; sea ice 430 344 - Leu CAA [ENA] ¢þ
>WENV170120585 CENK01006378 [CENK] marine metagenome genome assembly TARA_018_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1230 1316 + Leu CAA [ENA] ¢þ
>WENV170120977 CENL01032053 [CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2406 2492 + Leu CAA [ENA] ¢þ
>WENV170121486 CENM01033075 [CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 142 56 - Leu CAA [ENA] ¢þ
>WENV170130768 CENR01028793 [CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 67777 67863 + Leu CAA [ENA] ¢þ
>WENV170131005 CENS01001464 [CENS] marine metagenome genome assembly TARA_022_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2392 2306 - Leu CAA [ENA] ¢þ
>WENV170151742 CEOD01031104 [CEOD] marine metagenome genome assembly TARA_036_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 179 265 + Leu CAA [ENA] ¢þ
>WENV170151940 CEOE01008821 [CEOE] marine metagenome genome assembly TARA_025_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 41649 41735 + Leu CAA [ENA] ¢þ
>WENV170155508 CEOG01037079 [CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 391 477 + Leu CAA [ENA] ¢þ
>WENV170162005 CEOL01081091 [CEOL] marine metagenome genome assembly TARA_038_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 426 512 + Leu CAA [ENA] ¢þ
>WENV170193775 CEPI01019851 [CEPI] marine metagenome genome assembly TARA_041_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 352 266 - Leu CAA [ENA] ¢þ
>WENV170200370 CEPN01005404 [CEPN] marine metagenome genome assembly TARA_038_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 36349 36435 + Leu CAA [ENA] ¢þ
>WENV170248961 CEQR01013400 [CEQR] marine metagenome genome assembly TARA_070_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 290 204 - Leu CAA [ENA] ¢þ
>WENV170267266 CERF01037901 [CERF] marine metagenome genome assembly TARA_072_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 529 443 - Leu CAA [ENA] ¢þ
>WENV170271430 CERJ01014750 [CERJ] marine metagenome genome assembly TARA_066_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2345 2259 - Leu CAA [ENA] ¢þ
>WENV170276529 CERN01056499 [CERN] marine metagenome genome assembly TARA_066_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 5130 5216 + Leu CAA [ENA] ¢þ
>WENV170276647 CERO01004776 [CERO] marine metagenome genome assembly TARA_068_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 73786 73872 + Leu CAA [ENA] ¢þ
>WENV170283724 CERU01097444 [CERU] marine metagenome genome assembly TARA_065_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 165 79 - Leu CAA [ENA] ¢þ
>WENV170290220 CERZ01027552 [CERZ] marine metagenome genome assembly TARA_082_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 307 393 + Leu CAA [ENA] ¢þ
>WENV170550616 CXWF01004704 [CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 94722 94636 - Leu CAA [ENA] ¢þ
>WENV170564955 CZQD01000028 [CZQD] hydrothermal vent metagenome; ocean water 130135 130221 + Leu CAA [ENA] ¢þ
>WENV170612893 FUWD012733408 [FUWD] metagenome; unknown 95 9 - Leu CAA [ENA] ¢þ
>WENV170962764 MRWF01025951 [MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell 477 391 - Leu CAA [ENA] ¢þ
>WENV170963247 MRWG01000062 [MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell 41751 41837 + Leu CAA [ENA] ¢þ
>SRA1052887 SRR035098.292590 454 Sequencing (SRP001819) 196 282 + Leu CAA [SRA]
>W1511564520 LADU01000057 Alphaproteobacteria Hyphomonas sp. BRH_c22 [LADU] 15498 15412 - Leu CAA [ENA] ¡û
>WENV078435 AAGA01013348 Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf) 81 167 + Leu CAA [ENA]
Identical group No.146643 (1 seq.)
>WENV078434 AAGA01012723 Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf) 319 407 + Leu CAA [ENA]
Identical group No.158369 (4 seq.)
>W1810157276 PJBU01000117 Gammaproteobacteria Psychrobacter sp. MES7-P7E [PJBU] 53149 53234 + Leu CAA [ENA] ¡û
>W1810157415 PJBY01000071 Gammaproteobacteria Psychrobacter sp. Sarcosine-3u-12 [PJBY] 27805 27890 + Leu CAA [ENA] ¡û
>W121043511 AHVZ01000021 Gammaproteobacteria Psychrobacter sp. PAMC 21119 [AHVZ] 37148 37233 + Leu CAA [ENA] ¡û
>WENV078408 AAGA01008605 Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf) 817 904 + Leu CAA [ENA]
Identical group No.159801 (24 seq.)
>C171063274 CP017478 Bacteroidota Urechidicola croceus LPB0138 [CP017478] 2530652 2530737 + Leu CAA - ¡û
>WENV182541535 OJAU01000008 [OJAU] seawater metagenome; Sea water 324 241 - Leu CAA [ENA] ¢þ
>WENV182546659 OJBP01000837 [OJBP] seawater metagenome; Sea water 11563 11646 + Leu CAA [ENA] ¢þ
>WENV182557829 OJDL01000088 [OJDL] seawater metagenome; Sea water 29859 29776 - Leu CAA [ENA] ¢þ
>WENV182564675 OJEF01002965 [OJEF] seawater metagenome; Sea water 106 189 + Leu CAA [ENA] ¢þ
>WENV182565181 OJEH01000170 [OJEH] seawater metagenome; Sea water 9158 9075 - Leu CAA [ENA] ¢þ
>WENV182567457 OJEO01001412 [OJEO] seawater metagenome; Sea water 1232 1149 - Leu CAA [ENA] ¢þ
>WENV182581959 OJGZ01000859 [OJGZ] seawater metagenome; Sea water 6661 6744 + Leu CAA [ENA] ¢þ
>WENV182584955 OJHG01037455 [OJHG] seawater metagenome; Sea water 492 575 + Leu CAA [ENA] ¢þ
>WENV183627820 OOGL01054044 [OOGL] marine metagenome; sea ice 453 370 - Leu CAA [ENA] ¢þ
>WENV170229587 CEQG01136577 [CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 313 228 - Leu CAA [ENA] ¢þ
>WENV170271581 CERJ01052694 [CERJ] marine metagenome genome assembly TARA_066_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 397 482 + Leu CAA [ENA] ¢þ
>WENV170366121 CETO01034946 [CETO] marine metagenome genome assembly TARA_122_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 231 316 + Leu CAA [ENA] ¢þ
>WENV170372056 CETS01060929 [CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 231 316 + Leu CAA [ENA] ¢þ
>WENV170477787 CEVJ01134705 [CEVJ] marine metagenome genome assembly TARA_146_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 277 362 + Leu CAA [ENA] ¢þ
>WENV170479001 CEVK01134329 [CEVK] marine metagenome genome assembly TARA_149_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 256 341 + Leu CAA [ENA] ¢þ
>WENV170666750 JYMV01040369 [JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean 86 1 - Leu CAA [ENA] ¢þ
>WENV170667214 JYMV01044703 [JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean 13340 13425 + Leu CAA [ENA] ¢þ
>WENV170674368 LAZR01060392 [LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment 824 909 + Leu CAA [ENA] ¢þ
>W1911708421 QOVL01000009 Bacteroidota Leeuwenhoekiella marinoflava LMG 1345 [QOVL] 143273 143190 - Leu CAA [ENA] ¡û
>W1511433229 JUHB01000001 Bacteroidota Cellulophaga sp. Hel_I_12 [JUHB] 2922443 2922528 + Leu CAA [ENA] ¡û
>W121068177 AJUG01000001 Bacteroidota Galbibacter orientalis DSM 19592 [AJUG] 343136 343221 + Leu CAA [ENA] ¡û
>WENV078423 AAGA01010946 Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf) 729 816 + Leu CAA [ENA]
>W1710583119 FQUN01000030 Bacteroidota Leeuwenhoekiella marinoflava DSM 3653 [FQUN] 9547 9462 - Leu CAA [ENA] ¡û
Identical group No.211634 (1 seq.)
>WENV078419 AAGA01010626 Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf) 302 388 + Leu CAA [ENA]
Identical group No.229309 (9 seq.)
>WENV182559793 OJDQ01005244 [OJDQ] seawater metagenome; Sea water 1284 1204 - Leu CAA [ENA] ¢þ
>WENV182563915 OJED01002573 [OJED] seawater metagenome; Sea water 188 108 - Leu CAA [ENA] ¢þ
>WENV182581665 OJGX01033253 [OJGX] seawater metagenome; Sea water 532 612 + Leu CAA [ENA] ¢þ
>WENV182591636 OJIO01001065 [OJIO] seawater metagenome; Sea water 11041 11121 + Leu CAA [ENA] ¢þ
>W141276312 JADR01000003 Bacteroidota Olleya marilimosa CAM030 [JADR] 92234 92314 + Leu CAA [ENA] ¡û
>WENV170297837 CESF01013150 [CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 199112 199192 + Leu CAA [ENA] ¢þ
>WENV170937523 MDTG01293094 [MDTG] marine metagenome; seawater 143525 143605 + Leu CAA [ENA] ¢þ
>W1910693660 MDGO01000009 Bacteroidota Gaetbulibacter sp. 5U11 [MDGO] 293666 293586 - Leu CAA [ENA] ¡û
>WENV078370 AAGA01002328 Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf) 1257 1173 - Leu CAA [ENA]
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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