tRNA genes clustered and arranged according to each identical group

Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)

Anticodon = CCT

HIT: 3 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.281027 (92 seq.)
>W1711120486 LUGI01000001 Alphaproteobacteria Citromicrobium sp. RCC1897 [LUGI] 371359 371283 - Arg CCT [ENA] ¡û
>W1711125681 LUNP01000005 Alphaproteobacteria Erythrobacter sp. REDSEA-S22_B4 [LUNP] 310984 311060 + Arg CCT [ENA] ¡û
>W1711125732 LUNQ01000003 Alphaproteobacteria Erythrobacter sp. REDSEA-S28_B2 [LUNQ] 703369 703293 - Arg CCT [ENA] ¡û
>W1711125784 LUNR01000007 Alphaproteobacteria Erythrobacter sp. REDSEA-S34_B3 [LUNR] 703647 703571 - Arg CCT [ENA] ¡û
>W1711125829 LUNS01000080 Alphaproteobacteria Erythrobacter sp. REDSEA-S36_B6 [LUNS] 51016 51092 + Arg CCT [ENA] ¡û
>W1711125874 LUNT01000082 Alphaproteobacteria Erythrobacter sp. REDSEA-S37_B3 [LUNT] 31989 31913 - Arg CCT [ENA] ¡û
>W1711125901 LUNU01000003 Alphaproteobacteria Erythrobacter sp. REDSEA-S40_B1 [LUNU] 703745 703669 - Arg CCT [ENA] ¡û
>W1711125944 LUNV01000015 Alphaproteobacteria Erythrobacter sp. REDSEA-S41_B1 [LUNV] 51886 51810 - Arg CCT [ENA] ¡û
>W1711125997 LUNW01000009 Alphaproteobacteria Erythrobacter sp. REDSEA-S42_B5 [LUNW] 310686 310762 + Arg CCT [ENA] ¡û
>W1711126040 LUNX01000017 Alphaproteobacteria Erythrobacter sp. REDSEA-S43_B2 [LUNX] 609506 609430 - Arg CCT [ENA] ¡û
>W1711126062 LUNY01000041 Alphaproteobacteria Erythrobacter sp. REDSEA-S45_B7 [LUNY] 2961 2885 - Arg CCT [ENA] ¡û
>W131215027 ATUR01000002 Alphaproteobacteria Novosphingopyxis baekryungensis DSM 16222 [ATUR] 520525 520601 + Arg CCT [ENA] ¡û
>WENV181320522 OFKH01005703 [OFKH] marine metagenome; sea ice 312 236 - Arg CCT [ENA] ¢þ
>WENV181322505 OFKS01001160 [OFKS] marine metagenome; sea ice 575 499 - Arg CCT [ENA] ¢þ
>WENV181324811 OFLH01010079 [OFLH] marine metagenome; sea ice 621 545 - Arg CCT [ENA] ¢þ
>WENV182541828 OJAU01004848 [OJAU] seawater metagenome; Sea water 829 905 + Arg CCT [ENA] ¢þ
>WENV182546213 OJBO01002742 [OJBO] seawater metagenome; Sea water 1315 1239 - Arg CCT [ENA] ¢þ
>WENV182546653 OJBP01000778 [OJBP] seawater metagenome; Sea water 7102 7178 + Arg CCT [ENA] ¢þ
>WENV182549702 OJBY01010061 [OJBY] seawater metagenome; Sea water 467 543 + Arg CCT [ENA] ¢þ
>WENV182557739 OJDK01005455 [OJDK] seawater metagenome; Sea water 372 448 + Arg CCT [ENA] ¢þ
>WENV182558982 OJDN01029781 [OJDN] seawater metagenome; Sea water 68 144 + Arg CCT [ENA] ¢þ
>WENV182581770 OJGZ01000009 [OJGZ] seawater metagenome; Sea water 34937 35013 + Arg CCT [ENA] ¢þ
>WENV182585788 OJHI01010377 [OJHI] seawater metagenome; Sea water 417 341 - Arg CCT [ENA] ¢þ
>WENV182588161 OJHO01010157 [OJHO] seawater metagenome; Sea water 465 389 - Arg CCT [ENA] ¢þ
>WENV183614914 OOEA01010860 [OOEA] marine metagenome; sea ice 469 545 + Arg CCT [ENA] ¢þ
>WENV183616929 OOEE01012301 [OOEE] marine metagenome; sea ice 366 442 + Arg CCT [ENA] ¢þ
>WENV183624842 OOGE01018435 [OOGE] marine metagenome; sea ice 289 213 - Arg CCT [ENA] ¢þ
>WENV170175739 CEOS01002533 [CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 3835 3911 + Arg CCT [ENA] ¢þ
>WENV170176124 CEOS01042059 [CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2754 2678 - Arg CCT [ENA] ¢þ
>WENV170192792 CEPG01010797 [CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 195 119 - Arg CCT [ENA] ¢þ
>WENV170221762 CEQC01006817 [CEQC] marine metagenome genome assembly TARA_076_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1603 1679 + Arg CCT [ENA] ¢þ
>WENV170229571 CEQG01134004 [CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 3315 3239 - Arg CCT [ENA] ¢þ
>WENV170229733 CEQG01152582 [CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1118 1042 - Arg CCT [ENA] ¢þ
>WENV170266897 CERE01138346 [CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 420 496 + Arg CCT [ENA] ¢þ
>WENV170278995 CERQ01208796 [CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 452 528 + Arg CCT [ENA] ¢þ
>WENV170307915 CESK01026975 [CESK] marine metagenome genome assembly TARA_078_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 14584 14508 - Arg CCT [ENA] ¢þ
>WENV170308709 CESL01053011 [CESL] marine metagenome genome assembly TARA_102_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 213 137 - Arg CCT [ENA] ¢þ
>WENV170337609 CETA01137490 [CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2652 2728 + Arg CCT [ENA] ¢þ
>WENV170370312 CETR01087163 [CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 174 250 + Arg CCT [ENA] ¢þ
>WENV170372286 CETS01080010 [CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1402 1478 + Arg CCT [ENA] ¢þ
>WENV170398005 CEUD01115038 [CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 477 401 - Arg CCT [ENA] ¢þ
>WENV170422102 CEUN01133613 [CEUN] marine metagenome genome assembly TARA_124_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 308 232 - Arg CCT [ENA] ¢þ
>WENV170529951 CEWJ01227094 [CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 207 131 - Arg CCT [ENA] ¢þ
>WENV170668177 LADL02001608 [LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole 15148 15224 + Arg CCT [ENA] ¢þ
>WENV170727318 LULE01000001 [LULE] marine metagenome; Red Sea water column Station 192 - depth 10m 703745 703669 - Arg CCT [ENA] ¢þ
>WENV170728674 LULF01000123 [LULF] marine metagenome; Red Sea water column Station 169 - depth 500m 21053 20977 - Arg CCT [ENA] ¢þ
>WENV170730462 LULH01000010 [LULH] marine metagenome; Red Sea water column Station 169 - depth 100m 31989 31913 - Arg CCT [ENA] ¢þ
>WENV170731329 LULI01000040 [LULI] marine metagenome; Red Sea water column Station 169 - depth 50m 51016 51092 + Arg CCT [ENA] ¢þ
>WENV170732943 LULJ01002503 [LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m 716 792 + Arg CCT [ENA] ¢þ
>WENV170733667 LULK01000001 [LULK] marine metagenome; Red Sea water column Station 169 - depth 10m 703647 703571 - Arg CCT [ENA] ¢þ
>WENV170735810 LULL01013808 [LULL] marine metagenome; Red Sea water column Station 149 - depth 500m 400 476 + Arg CCT [ENA] ¢þ
>WENV170737403 LULO01000032 [LULO] marine metagenome; Red Sea water column Station 149 - depth 50m 119357 119433 + Arg CCT [ENA] ¢þ
>WENV170739197 LULQ01000001 [LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m 703369 703293 - Arg CCT [ENA] ¢þ
>WENV170743376 LULW01000001 [LULW] marine metagenome; Red Sea water column Station 108 - depth 10m 310984 311060 + Arg CCT [ENA] ¢þ
>WENV170746237 LULZ01016566 [LULZ] marine metagenome; Red Sea water column Station 91 - depth 100m 506 582 + Arg CCT [ENA] ¢þ
>WENV170758819 LUMS01000011 [LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m 51886 51810 - Arg CCT [ENA] ¢þ
>WENV170759530 LUMT01000003 [LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m 310686 310762 + Arg CCT [ENA] ¢þ
>WENV170760710 LUMU01000005 [LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m 609506 609430 - Arg CCT [ENA] ¢þ
>WENV170761523 LUMV01000887 [LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m 3821 3897 + Arg CCT [ENA] ¢þ
>WENV170761995 LUMW01000349 [LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m 2961 2885 - Arg CCT [ENA] ¢þ
>WENV170765365 LWDU01037317 [LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater 3089 3013 - Arg CCT [ENA] ¢þ
>WENV170910984 MDTE01099270 [MDTE] marine metagenome; seawater 4382 4458 + Arg CCT [ENA] ¢þ
>C181062129 CP022336 Alphaproteobacteria Sphingorhabdus sp. SMR4y [CP022336] 224338 224414 + Arg CCT - ¡û
>C181068257 CP022548 Alphaproteobacteria Sphingorhabdus sp. YGSMI21 [CP022548] 2602965 2603041 + Arg CCT - ¡û
>C181199764 CP031357 Alphaproteobacteria Erythrobacter aureus YH-07 [CP031357] 2060701 2060625 - Arg CCT - ¡û
>W10108360 ADAE01000018 Alphaproteobacteria Citromicrobium bathyomarinum JL354 [ADAE] 136603 136679 + Arg CCT [ENA] ¡û
>W11110747 ADAE01000018 Alphaproteobacteria Citromicrobium bathyomarinum JL354 [ADAE] 136603 136679 + Arg CCT [ENA] ¡û
>C161034135 CP011344 Alphaproteobacteria Citromicrobium sp. JL477 [CP011344] 2201646 2201570 - Arg CCT - ¡û
>C161073974 CP014545 Alphaproteobacteria Sphingorhabdus sp. M41 [CP014545] 2130114 2130038 - Arg CCT [Ensembl] ¡û
>W1610576066 LAIH01000013 Alphaproteobacteria Citromicrobium sp. JL31 [LAIH] 34134 34058 - Arg CCT [ENA] ¡û
>W1610576197 LAPR01000010 Alphaproteobacteria Citromicrobium sp. JL1351 [LAPR] 103553 103629 + Arg CCT [ENA] ¡û
>W1610576402 LARQ01000015 Alphaproteobacteria Citromicrobium sp. JL2201 [LARQ] 34119 34043 - Arg CCT [ENA] ¡û
>W1610584013 LBLY01000001 Alphaproteobacteria Citromicrobium sp. RCC1885 [LBLY] 1398246 1398322 + Arg CCT [ENA] ¡û
>W1610584059 LBLZ01000002 Alphaproteobacteria Citromicrobium sp. RCC1878 [LBLZ] 1398257 1398333 + Arg CCT [ENA] ¡û
>W1610931683 LUGI01000001 Alphaproteobacteria Citromicrobium sp. RCC1897 [LUGI] 371359 371283 - Arg CCT [ENA] ¡û
>W1610936614 LUNP01000005 Alphaproteobacteria Erythrobacter sp. REDSEA-S22_B4 [LUNP] 310984 311060 + Arg CCT [ENA] ¡û
>W1610936665 LUNQ01000003 Alphaproteobacteria Erythrobacter sp. REDSEA-S28_B2 [LUNQ] 703369 703293 - Arg CCT [ENA] ¡û
>W1610936717 LUNR01000007 Alphaproteobacteria Erythrobacter sp. REDSEA-S34_B3 [LUNR] 703647 703571 - Arg CCT [ENA] ¡û
>W1610936762 LUNS01000080 Alphaproteobacteria Erythrobacter sp. REDSEA-S36_B6 [LUNS] 51016 51092 + Arg CCT [ENA] ¡û
>W1610936807 LUNT01000082 Alphaproteobacteria Erythrobacter sp. REDSEA-S37_B3 [LUNT] 31989 31913 - Arg CCT [ENA] ¡û
>W1610936834 LUNU01000003 Alphaproteobacteria Erythrobacter sp. REDSEA-S40_B1 [LUNU] 703745 703669 - Arg CCT [ENA] ¡û
>W1610936877 LUNV01000015 Alphaproteobacteria Erythrobacter sp. REDSEA-S41_B1 [LUNV] 51886 51810 - Arg CCT [ENA] ¡û
>W1610936930 LUNW01000009 Alphaproteobacteria Erythrobacter sp. REDSEA-S42_B5 [LUNW] 310686 310762 + Arg CCT [ENA] ¡û
>W1610936973 LUNX01000017 Alphaproteobacteria Erythrobacter sp. REDSEA-S43_B2 [LUNX] 609506 609430 - Arg CCT [ENA] ¡û
>W1610936995 LUNY01000041 Alphaproteobacteria Erythrobacter sp. REDSEA-S45_B7 [LUNY] 2961 2885 - Arg CCT [ENA] ¡û
>WENV078215 AAFZ01009233 Fossil microbial community from Whale Fall (Santa Cruz Basin) 300 378 + Arg CCT [ENA]
>WENV078507 AAGA01024669 Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf) 293 371 + Arg CCT [ENA]
>W1710694330 LAIH01000013 Alphaproteobacteria Citromicrobium sp. JL31 [LAIH] 34134 34058 - Arg CCT [ENA] ¡û
>W1710694559 LAPR01000010 Alphaproteobacteria Citromicrobium sp. JL1351 [LAPR] 103553 103629 + Arg CCT [ENA] ¡û
>W1710694891 LARQ01000015 Alphaproteobacteria Citromicrobium sp. JL2201 [LARQ] 34119 34043 - Arg CCT [ENA] ¡û
>W1710703161 LBLY01000001 Alphaproteobacteria Citromicrobium sp. RCC1885 [LBLY] 1398246 1398322 + Arg CCT [ENA] ¡û
>W1710703207 LBLZ01000002 Alphaproteobacteria Citromicrobium sp. RCC1878 [LBLZ] 1398257 1398333 + Arg CCT [ENA] ¡û
Identical group No.482759 (32 seq.)
>W1710777902 LJCF01000001 Gammaproteobacteria Psychrobacter sp. P11G3 [LJCF] 1699810 1699735 - Arg CCT [ENA] ¡û
>W1710915863 LNUO01000200 Gammaproteobacteria Psychrobacter sp. ENNN9_III [LNUO] 1082 1007 - Arg CCT [ENA] ¡û
>W1711303090 MAJM01000001 Gammaproteobacteria Psychrobacter sp. B29-1 [MAJM] 187914 187989 + Arg CCT [ENA] ¡û
>W1711682901 MRYA01000002 Gammaproteobacteria Psychrobacter sp. Cmf 22.2 [MRYA] 531526 531451 - Arg CCT [ENA] ¡û
>WENV180101040 OAOU01000020 [OAOU] marine metagenome; ENVO:00002010 SEAWATER 60948 61023 + Arg CCT [ENA] ¢þ
>W141086195 AUSW01000035 Gammaproteobacteria Psychrobacter aquaticus CMS 56 [AUSW] 394241 394316 + Arg CCT [ENA] ¡û
>W141199953 AYXM01000049 Gammaproteobacteria Psychrobacter sp. AC24 [AYXM] 945 870 - Arg CCT [ENA] ¡û
>W141200541 AYXZ01000159 Gammaproteobacteria Psychrobacter sp. TB47 [AYXZ] 47362 47437 + Arg CCT [ENA] ¡û
>W141200583 AYYA01000064 Gammaproteobacteria Psychrobacter sp. TB67 [AYYA] 945 870 - Arg CCT [ENA] ¡û
>W141233979 BAWG01000006 Gammaproteobacteria Psychrobacter sp. JCM 18900 [BAWG] 148781 148706 - Arg CCT [ENA] ¡û
>W141234007 BAWH01000005 Gammaproteobacteria Psychrobacter sp. JCM 18901 [BAWH] 30002 29927 - Arg CCT [ENA] ¡û
>W141234065 BAWI01000012 Gammaproteobacteria Psychrobacter sp. JCM 18902 [BAWI] 174 99 - Arg CCT [ENA] ¡û
>WENV182542148 OJAV01005722 [OJAV] seawater metagenome; Sea water 734 659 - Arg CCT [ENA] ¢þ
>WENV182549910 OJBZ01000386 [OJBZ] seawater metagenome; Sea water 2045 1970 - Arg CCT [ENA] ¢þ
>WENV182562423 OJDZ01002700 [OJDZ] seawater metagenome; Sea water 2424 2499 + Arg CCT [ENA] ¢þ
>WENV170580799 FUFK010051546 [FUFK] metagenome; unknown 5113 5038 - Arg CCT [ENA] ¢þ
>W1910891767 NEXU01000047 Gammaproteobacteria Psychrobacter sp. DAB_AL32B [NEXU] 6901 6976 + Arg CCT [ENA] ¡û
>W1810155451 PJAS01000051 Gammaproteobacteria Psychrobacter sp. 4Bb [PJAS] 146388 146313 - Arg CCT [ENA] ¡û
>W1810155497 PJAT01000077 Gammaproteobacteria Psychrobacter sp. 4Dc [PJAT] 11245 11320 + Arg CCT [ENA] ¡û
>W1810156175 PJBD01000014 Gammaproteobacteria Psychrobacter sp. Choline-02u-13 [PJBD] 17505 17430 - Arg CCT [ENA] ¡û
>W1810156332 PJBF01000055 Gammaproteobacteria Psychrobacter sp. Choline-02u-9 [PJBF] 17505 17430 - Arg CCT [ENA] ¡û
>W1810156435 PJBH01000065 Gammaproteobacteria Psychrobacter sp. Choline-3u-12 [PJBH] 22831 22756 - Arg CCT [ENA] ¡û
>W1810157247 PJBU01000077 Gammaproteobacteria Psychrobacter sp. MES7-P7E [PJBU] 21378 21303 - Arg CCT [ENA] ¡û
>W1810157416 PJBY01000077 Gammaproteobacteria Psychrobacter sp. Sarcosine-3u-12 [PJBY] 75233 75158 - Arg CCT [ENA] ¡û
>W1810671439 QJSU01000006 Gammaproteobacteria Psychrobacter fozii CECT 5889 [QJSU] 72885 72810 - Arg CCT [ENA] ¡û
>W1810692659 QLKS01000001 Gammaproteobacteria Psychrobacter proteolyticus HAMBI_2948 [QLKS] 96229 96154 - Arg CCT [ENA] ¡û
>C161042757 CP012529 Gammaproteobacteria Psychrobacter sp. P2G3 [CP012529] 1708879 1708804 - Arg CCT - ¡û
>C161042805 CP012533 Gammaproteobacteria Psychrobacter sp. P11G5 [CP012533] 1756613 1756538 - Arg CCT [Ensembl] ¡û
>W121043518 AHVZ01000024 Gammaproteobacteria Psychrobacter sp. PAMC 21119 [AHVZ] 53505 53580 + Arg CCT [ENA] ¡û
>W1610642088 LJCF01000001 Gammaproteobacteria Psychrobacter sp. P11G3 [LJCF] 1699810 1699735 - Arg CCT [ENA] ¡û
>W1610774102 LNUO01000200 Gammaproteobacteria Psychrobacter sp. ENNN9_III [LNUO] 1082 1007 - Arg CCT [ENA] ¡û
>WENV078374 AAGA01002818 Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf) 1260 1337 + Arg CCT [ENA]
Identical group No.732427 (5 seq.)
>w013966 AAOB01000005 Actinomycetota marine actinobacterium PHSC20C1 [AAOB] 130560 130486 - Arg CCT [ENA] ¡û
>C191139342 CP035375 Actinomycetota Salinibacterium sp. UTAS2018 [CP035375] 1303601 1303529 - Arg CCT - ¡û
>W1810090189 PGFH01000001 Actinomycetota Salinibacterium amurskyense DSM 16400 [PGFH] 961615 961689 + Arg CCT [ENA] ¡û
>W121043555 AHWA01000004 Actinomycetota Salinibacterium sp. PAMC 21357 [AHWA] 311607 311533 - Arg CCT [ENA] ¡û
>WENV078460 AAGA01016683 Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf) 481 555 + Arg CCT [ENA]
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK