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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
Anticodon = CGT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.67762 (1 seq.)
>WENV078437
AAGA01014212
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
802
711
-
Thr
CGT
[ENA]
Identical group No.457380 (26 seq.)
>W1710860359
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
226913
226838
-
Thr
CGT
[ENA]
¡û
>w013975
AAOB01000010
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
40492
40569
+
Thr
CGT
[ENA]
¡û
>WENV180016228
FSUF01001537
[FSUF] metagenome; soil
3186
3112
-
Thr
CGT
[ENA]
¢þ
>W141809710
JPRS01000138
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
30301
30226
-
Thr
CGT
[ENA]
¡û
>W141809720
JPRS01000249
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
67
142
+
Thr
CGT
[ENA]
¡û
>W1911823607
QZVS01000085
Actinomycetota
Cryobacterium melibiosiphilum Hh39 [QZVS]
101218
101145
-
Thr
CGT
[ENA]
¡û
>SRA1002931
SRR002326.107401
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
206
131
-
Thr
CGT
[SRA]
>W1810168639
PJJJ01000037
Actinomycetota
Cryobacterium sp. Y82 [PJJJ]
34281
34206
-
Thr
CGT
[ENA]
¡û
>W1810168678
PJJK01000118
Actinomycetota
Cryobacterium sp. Y62 [PJJK]
61035
60960
-
Thr
CGT
[ENA]
¡û
>W1810168700
PJJL01000069
Actinomycetota
Cryobacterium sp. Y57 [PJJL]
223199
223272
+
Thr
CGT
[ENA]
¡û
>W1810168752
PJJM01000095
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
122989
123064
+
Thr
CGT
[ENA]
¡û
>W1810168769
PJJN01000022
Actinomycetota
Cryobacterium sp. Y29 [PJJN]
43267
43342
+
Thr
CGT
[ENA]
¡û
>W1810168828
PJJO01000055
Actinomycetota
Cryobacterium sp. Y11 [PJJO]
175951
175877
-
Thr
CGT
[ENA]
¡û
>W1810168928
PJJQ01000033
Actinomycetota
Cryobacterium sp. N21 [PJJQ]
253829
253904
+
Thr
CGT
[ENA]
¡û
>W1810168967
PJJR01000051
Actinomycetota
Cryobacterium sp. N19 [PJJR]
252211
252286
+
Thr
CGT
[ENA]
¡û
>W1810169078
PJJT01000091
Actinomycetota
Cryobacterium sp. M91 [PJJT]
281030
280955
-
Thr
CGT
[ENA]
¡û
>W1810169215
PJJW01000041
Actinomycetota
Cryobacterium sp. M15 [PJJW]
255331
255256
-
Thr
CGT
[ENA]
¡û
>SRA1003269
SRR002326.353682
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
83
8
-
Thr
CGT
[SRA]
>W1810240356
PPTG01000002
Actinomycetota
Cryobacterium aureum Hh31 [PPTG]
186085
186160
+
Thr
CGT
[ENA]
¡û
>W1511317433
JPXF01000065
Actinomycetota
Cryobacterium roopkundense RuG17 [JPXF]
25980
26055
+
Thr
CGT
[ENA]
¡û
>W121043566
AHWA01000006
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
26182
26255
+
Thr
CGT
[ENA]
¡û
>W1610722705
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
226913
226838
-
Thr
CGT
[ENA]
¡û
>WENV078449
AAGA01015642
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
346
423
+
Thr
CGT
[ENA]
>W1710523523
FNIB01000002
Actinomycetota
Cryobacterium flavum [FNIB]
168919
168844
-
Thr
CGT
[ENA]
¡û
>W1710546925
FOCN01000007
Actinomycetota
Cryobacterium luteum [FOCN]
115627
115702
+
Thr
CGT
[ENA]
¡û
>W1710563681
FOPW01000007
Actinomycetota
Cryobacterium levicorallinum [FOPW]
195397
195472
+
Thr
CGT
[ENA]
¡û
Identical group No.620244 (1 seq.)
>WENV078410
AAGA01009225
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
388
463
+
Thr
CGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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