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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Fossil microbiome from Mammuthus primigenius
Anticodon = CAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276119 (25 seq.)
>W1710865652
LMGV01000009
Actinomycetota
Nocardioides sp. Root614 [LMGV]
5991
6067
+
Met
CAT
[ENA]
¡û
>W1710866351
LMHJ01000006
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
5991
6067
+
Met
CAT
[ENA]
¡û
>W1710880664
LMSM01000006
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
19480
19406
-
Met
CAT
[ENA]
¡û
>W1710880944
LMSR01000017
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
241061
240987
-
Met
CAT
[ENA]
¡û
>W1712084132
NHQT01000006
Actinomycetota
Nocardioides sp. XL1 [NHQT]
17460
17384
-
Met
CAT
[ENA]
¡û
>W131190810
ASEP01000116
Actinomycetota
Nocardioides sp. CF8 [ASEP]
31868
31944
+
Met
CAT
[ENA]
¡û
>W131229401
AUGT01000023
Actinomycetota
Nocardioides halotolerans DSM 19273 [AUGT]
100141
100215
+
Met
CAT
[ENA]
¡û
>C015195
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
2095934
2096010
+
Met
CAT
[Ensembl]
¡û
>WENV180690727
OCZS010020461
[OCZS] soil metagenome; soil
569
645
+
Ile2
CAT
[ENA]
¢þ
>WENV181162392
OEIN01121802
[OEIN] soil metagenome; soil
164
90
-
Ile2
CAT
[ENA]
¢þ
>WENV170552171
CXWJ01042489
[CXWJ] wastewater metagenome; activated sludge
757
681
-
Met
CAT
[ENA]
¢þ
>C191158874
CP038267
Actinomycetota
Nocardioides euryhalodurans MMS17-SY117 [CP038267]
948285
948210
-
Met
CAT
-
¡û
>W141815879
JQJL01000019
Actinomycetota
Nocardioides sp. UNC345MFTsu5.1 [JQJL]
13800
13724
-
Met
CAT
[ENA]
¡û
>W09103283
AAJB01000084
Actinomycetota
Nocardioides sp. JS614 [AAJB]
13883
13807
-
Met
CAT
[ENA]
¡û
>W1911672128
QGDD01000008
Actinomycetota
Nocardioides silvaticus CCTCC AB 2018079 [QGDD]
13558
13482
-
Met
CAT
[ENA]
¡û
>W1810462634
PZYX01000009
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
8336
8261
-
Met
CAT
[ENA]
¡û
>C161082879
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
3937279
3937203
-
Met
CAT
[Ensembl]
¡û
>W1610727998
LMGV01000009
Actinomycetota
Nocardioides sp. Root614 [LMGV]
5991
6067
+
Met
CAT
[ENA]
¡û
>W1610728697
LMHJ01000006
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
5991
6067
+
Met
CAT
[ENA]
¡û
>W1610743010
LMSM01000006
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
19480
19406
-
Met
CAT
[ENA]
¡û
>W1610743290
LMSR01000017
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
241061
240987
-
Met
CAT
[ENA]
¡û
>WENV080843
ABEF01006373
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
290
214
-
Met
CAT
[ENA]
>WENV086968
CAAM02028534
Fossil microbiome from Mammuthus primigenius
20
96
+
Met
CAT
[ENA]
>W1710523590
FNIC01000007
Actinomycetota
Nocardioides szechwanensis [FNIC]
25457
25381
-
Met
CAT
[ENA]
¡û
>W1710564153
FOQG01000026
Actinomycetota
Nocardioides psychrotolerans [FOQG]
9158
9084
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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