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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater metagenome, viral RNA fraction from lake water filtrate
Anticodon = TCC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.586994 (1 seq.)
>WENV11100019
ADVT01006934
Freshwater metagenome, viral RNA fraction from lake water filtrate
592
519
-
Gly
TCC
[ENA]
¡û
Identical group No.586997 (1 seq.)
>WENV11100024
ADVT01007860
Freshwater metagenome, viral RNA fraction from lake water filtrate
129
204
+
Gly
TCC
[ENA]
¡û
Identical group No.735100 (1 seq.)
>WENV11100013
ADVT01004932
Freshwater metagenome, viral RNA fraction from lake water filtrate
135
61
-
Gly
TCC
[ENA]
¡û
Identical group No.735102 (1 seq.)
>WENV11100018
ADVT01006899
Freshwater metagenome, viral RNA fraction from lake water filtrate
177
103
-
Gly
TCC
[ENA]
¡û
Identical group No.741444 (1 seq.)
>WENV11100042
ADVU01002008
Freshwater metagenome, viral RNA fraction from lake water filtrate
227
301
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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