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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = CAA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.111661 (1 seq.)
>ENV09000380
ABSN01060875
Freshwater sediment metagenome lwFormaldehyde_C1
232
319
+
Leu
CAA
[ENA]
¡û
Identical group No.115545 (37 seq.)
>W1710892477
LNDU01000034
Nitrospirota
Nitrospira sp. Ga0074138 [LNDU]
285
371
+
Leu
CAA
[ENA]
¡û
>WENV180283464
OBID01000162
[OBID] metagenome; sludge
27877
27963
+
Leu
CAA
[ENA]
¢þ
>WENV181168150
OEIU01180689
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
337
423
+
Leu
CAA
[ENA]
¢þ
>WENV181184913
OEKW01000077
[OEKW] metagenome; 1998
4996
5082
+
Leu
CAA
[ENA]
¢þ
>WENV181185032
OELA01000314
[OELA] metagenome; 1998
30574
30660
+
Leu
CAA
[ENA]
¢þ
>WENV181185191
OELE01000679
[OELE] metagenome; 1998
4121
4207
+
Leu
CAA
[ENA]
¢þ
>WENV183724638
PJQE01038742
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
552
466
-
Leu
CAA
[ENA]
¢þ
>WENV170551954
CXWJ01031847
[CXWJ] wastewater metagenome; activated sludge
739
653
-
Leu
CAA
[ENA]
¢þ
>WENV170552242
CXWJ01048837
[CXWJ] wastewater metagenome; activated sludge
766
852
+
Leu
CAA
[ENA]
¢þ
>WENV170552892
CXWK01003339
[CXWK] wastewater metagenome; activated sludge
22710
22796
+
Leu
CAA
[ENA]
¢þ
>WENV170553166
CXWK01009685
[CXWK] wastewater metagenome; activated sludge
18425
18339
-
Leu
CAA
[ENA]
¢þ
>WENV170555463
CXWL01000671
[CXWL] groundwater metagenome; biofilm material
12334
12420
+
Leu
CAA
[ENA]
¢þ
>WENV170556048
CXWL01004161
[CXWL] groundwater metagenome; biofilm material
68
154
+
Leu
CAA
[ENA]
¢þ
>WENV170556306
CXWL01006945
[CXWL] groundwater metagenome; biofilm material
10926
10840
-
Leu
CAA
[ENA]
¢þ
>WENV170557325
CXWL01024179
[CXWL] groundwater metagenome; biofilm material
1068
982
-
Leu
CAA
[ENA]
¢þ
>WENV170557677
CXWL01033743
[CXWL] groundwater metagenome; biofilm material
68
154
+
Leu
CAA
[ENA]
¢þ
>WENV170557731
CXWL01035399
[CXWL] groundwater metagenome; biofilm material
2452
2538
+
Leu
CAA
[ENA]
¢þ
>WENV170566133
FKKE01007388
[FKKE] freshwater metagenome; freshwater
5
91
+
Leu
CAA
[ENA]
¢þ
>WENV170576620
FRDC01001116
[FRDC] freshwater metagenome; water
15583
15669
+
Leu
CAA
[ENA]
¢þ
>WENV170576741
FRDC01001654
[FRDC] freshwater metagenome; water
34311
34225
-
Leu
CAA
[ENA]
¢þ
>WENV170577897
FSSH01002483
[FSSH] freshwater metagenome; drinking water
53910
53996
+
Leu
CAA
[ENA]
¢þ
>WENV170709592
LNFM01000508
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
71233
71147
-
Leu
CAA
[ENA]
¢þ
>WENV170713444
LNFM01031602
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4876
4962
+
Leu
CAA
[ENA]
¢þ
>WENV170714566
LNFM01082145
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1331
1245
-
Leu
CAA
[ENA]
¢þ
>W1910204722
FJVM02000017
Nitrospirota
Nitrospira cf. moscoviensis SBR1015 [FJVM]
34311
34225
-
Leu
CAA
[ENA]
¡û
>W1910204775
FJVN01000222
Nitrospirota
Nitrospira cf. moscoviensis SBR1015 [FJVN]
5
91
+
Leu
CAA
[ENA]
¡û
>W1910441953
FWEX01000005
Nitrospirota
Nitrospira sp. ND1 [FWEX]
845006
844920
-
Leu
CAA
[ENA]
¡û
>W1910731412
MHEN01000004
Nitrospirota
Nitrospirae bacterium RBG_19FT_COMBO_58_9 [MHEN]
2596
2510
-
Leu
CAA
[ENA]
¡û
>ENV09000385
ABSN01062412
Freshwater sediment metagenome lwFormaldehyde_C1
406
492
+
Leu
CAA
[ENA]
¡û
>C10109744
FP929003
Nitrospirota
Nitrospira defluvii [FP929003]
2699639
2699553
-
Leu
CAA
[Ensembl]
¡û
>W1610121157
CZPZ01000010
Nitrospirota
Candidatus Nitrospira nitrificans [CZPZ]
53944
53858
-
Leu
CAA
[ENA]
¡û
>W1610121210
CZQA01000009
Nitrospirota
Candidatus Nitrospira nitrosa [CZQA]
163353
163267
-
Leu
CAA
[ENA]
¡û
>W1610574670
JZQY01000050
Nitrospirota
Nitrospira sp. OLB3 [JZQY]
118876
118790
-
Leu
CAA
[ENA]
¡û
>W1610752743
LNDU01000034
Nitrospirota
Nitrospira sp. Ga0074138 [LNDU]
285
371
+
Leu
CAA
[ENA]
¡û
>W1710123861
CZPZ01000010
Nitrospirota
Candidatus Nitrospira nitrificans [CZPZ]
53944
53858
-
Leu
CAA
[ENA]
¡û
>W1710123914
CZQA01000009
Nitrospirota
Candidatus Nitrospira nitrosa [CZQA]
163353
163267
-
Leu
CAA
[ENA]
¡û
>W1710691905
JZQY01000050
Nitrospirota
Nitrospira sp. OLB3 [JZQY]
118876
118790
-
Leu
CAA
[ENA]
¡û
Identical group No.133792 (11 seq.)
>WENV180256945
OBEQ010867112
[OBEQ] groundwater metagenome; groundwater
156196
156282
+
Leu
CAA
[ENA]
¢þ
>WENV183702603
PDVI01007537
[PDVI] alkali sediment metagenome; glacial lake sediment
939
853
-
Leu
CAA
[ENA]
¢þ
>WENV170555962
CXWL01003535
[CXWL] groundwater metagenome; biofilm material
5923
6009
+
Leu
CAA
[ENA]
¢þ
>WENV170556043
CXWL01004071
[CXWL] groundwater metagenome; biofilm material
8534
8448
-
Leu
CAA
[ENA]
¢þ
>WENV170556530
CXWL01010029
[CXWL] groundwater metagenome; biofilm material
7158
7072
-
Leu
CAA
[ENA]
¢þ
>WENV170556740
CXWL01013006
[CXWL] groundwater metagenome; biofilm material
8293
8379
+
Leu
CAA
[ENA]
¢þ
>WENV170556895
CXWL01015751
[CXWL] groundwater metagenome; biofilm material
2020
2106
+
Leu
CAA
[ENA]
¢þ
>WENV170556896
CXWL01015752
[CXWL] groundwater metagenome; biofilm material
182
96
-
Leu
CAA
[ENA]
¢þ
>WENV170577591
FSSH01000249
[FSSH] freshwater metagenome; drinking water
39586
39500
-
Leu
CAA
[ENA]
¢þ
>W1911545238
OUNR01000020
Nitrospirota
Nitrospira lenta [OUNR]
123032
122946
-
Leu
CAA
[ENA]
¡û
>ENV09000353
ABSN01057369
Freshwater sediment metagenome lwFormaldehyde_C1
398
312
-
Leu
CAA
[ENA]
¡û
Identical group No.152649 (1 seq.)
>ENV09000208
ABSN01030468
Freshwater sediment metagenome lwFormaldehyde_C1
479
565
+
Leu
CAA
[ENA]
¡û
Identical group No.152656 (1 seq.)
>ENV09000411
ABSN01065838
Freshwater sediment metagenome lwFormaldehyde_C1
288
374
+
Leu
CAA
[ENA]
¡û
Identical group No.179295 (1 seq.)
>ENV09000152
ABSN01019157
Freshwater sediment metagenome lwFormaldehyde_C1
338
256
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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