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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = CCC
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.678257 (3 seq.)
>WENV180690690
OCZS010018038
[OCZS] soil metagenome; soil
756
830
+
Gly
CCC
[ENA]
¢þ
>W1910697862
MELE01000060
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b [MELE]
27977
27903
-
Gly
CCC
[ENA]
¡û
>ENV09000240
ABSN01036228
Freshwater sediment metagenome lwFormaldehyde_C1
807
733
-
Gly
CCC
[ENA]
¡û
Identical group No.685869 (3 seq.)
>ENV09000223
ABSN01033804
Freshwater sediment metagenome lwFormaldehyde_C1
676
750
+
Gly
CCC
[ENA]
¡û
>W1610574640
JZQX01000210
Armatimonadota
Armatimonadetes bacterium OLB18 [JZQX]
1251
1177
-
Gly
CCC
[ENA]
¡û
>W1710691875
JZQX01000210
Armatimonadota
Armatimonadetes bacterium OLB18 [JZQX]
1251
1177
-
Gly
CCC
[ENA]
¡û
Identical group No.715359 (3 seq.)
>WENV180247269
OBEQ010011021
[OBEQ] groundwater metagenome; groundwater
3788
3714
-
Gly
CCC
[ENA]
¢þ
>WENV180370970
OBOI01000031
[OBOI] sediment metagenome; sediment
13786
13858
+
Gly
CCC
[ENA]
¢þ
>ENV09000376
ABSN01059208
Freshwater sediment metagenome lwFormaldehyde_C1
315
387
+
Gly
CCC
[ENA]
¡û
Identical group No.752024 (2 seq.)
>W1711391377
MELL01000180
Actinomycetota
Actinobacteria bacterium RBG_13_63_9 [MELL]
25890
25816
-
Gly
CCC
[ENA]
¡û
>ENV09000321
ABSN01050192
Freshwater sediment metagenome lwFormaldehyde_C1
543
469
-
Gly
CCC
[ENA]
¡û
Identical group No.776237 (1 seq.)
>ENV09000289
ABSN01044880
Freshwater sediment metagenome lwFormaldehyde_C1
611
539
-
Pseudo
CCC
[ENA]
¡û
Identical group No.814783 (3 seq.)
>WENV170574993
FLYN01022226
[FLYN] hot springs metagenome; Sediment
4323
4250
-
Gly
CCC
[ENA]
¢þ
>ENV09000451
ABSN01071649
Freshwater sediment metagenome lwFormaldehyde_C1
393
466
+
Gly
CCC
[ENA]
¡û
>ENV09001032
ABSQ01018984
Freshwater sediment metagenome lwMethenol_C1
84
157
+
Gly
CCC
[ENA]
¡û
Identical group No.835757 (1 seq.)
>ENV09000291
ABSN01045273
Freshwater sediment metagenome lwFormaldehyde_C1
521
448
-
Gly
CCC
[ENA]
¡û
Identical group No.835764 (1 seq.)
>ENV09000444
ABSN01069745
Freshwater sediment metagenome lwFormaldehyde_C1
635
562
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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