tRNA genes clustered and arranged according to each identical group

Freshwater sediment metagenome lwFormaldehyde_C1

Anticodon = CCT

HIT: 13 Group(s).
Download Sequence Representative sequence of each cluster
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Sort by Identical group No. Sort by the number of tRNAs in the Identical group
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.302414 (34 seq.)
>W1710892782 LNEC01000019 Alphaproteobacteria Bradyrhizobiaceae bacterium Ga0074131 [LNEC] 612573 612649 + Arg CCT [ENA] ¡û
>W1711169170 LVYV01000001 Alphaproteobacteria Tardiphaga robiniae [LVYV] 498907 498831 - Arg CCT [ENA] ¡û
>W131226896 AUES01000019 Alphaproteobacteria Bradyrhizobium sp. URHA0002 [AUES] 52873 52797 - Arg CCT [ENA] ¡û
>W131228533 AUGA01000006 Alphaproteobacteria Bradyrhizobium sp. th.b2 [AUGA] 300665 300741 + Arg CCT [ENA] ¡û
>WENV180250676 OBEQ010303928 [OBEQ] groundwater metagenome; groundwater 1174 1250 + Arg CCT [ENA] ¢þ
>WENV180268087 OBEQ011928811 [OBEQ] groundwater metagenome; groundwater 79 3 - Arg CCT [ENA] ¢þ
>WENV180308474 OBJR01013812 [OBJR] soil metagenome; soil 306 230 - Arg CCT [ENA] ¢þ
>WENV180344694 OBLL01120100 [OBLL] soil metagenome; soil 272 196 - Arg CCT [ENA] ¢þ
>WENV180345042 OBLM01005239 [OBLM] soil metagenome; soil 97 21 - Arg CCT [ENA] ¢þ
>WENV180695348 OCZS013357283 [OCZS] soil metagenome; soil 86 162 + Arg CCT [ENA] ¢þ
>WENV181164645 OEIR01277127 [OEIR] soil metagenome; soil 185 109 - Arg CCT [ENA] ¢þ
>WENV183676310 ORJL011608540 [ORJL] groundwater metagenome; groundwater 365 441 + Arg CCT [ENA] ¢þ
>WENV170705922 LNAP01000622 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 22217 22141 - Arg CCT [ENA] ¢þ
>WENV170709257 LNFM01000219 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 645212 645288 + Arg CCT [ENA] ¢þ
>WENV170709775 LNFM01000686 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 48875 48951 + Arg CCT [ENA] ¢þ
>WENV170961919 MLJW01006852 [MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for 191 267 + Arg CCT [ENA] ¢þ
>WENV170974877 MTKY01079134 [MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant 862 938 + Arg CCT [ENA] ¢þ
>W1910548981 FZOX01000008 Alphaproteobacteria Tardiphaga sp. OK246 [FZOX] 187000 186924 - Arg CCT [ENA] ¡û
>W1810395573 PYCM01000750 Alphaproteobacteria Bradyrhizobium algeriense RST89 [PYCM] 5457 5381 - Arg CCT [ENA] ¡û
>W1810395580 PYCN01000001 Alphaproteobacteria Bradyrhizobium algeriense RST91 [PYCN] 488240 488164 - Arg CCT [ENA] ¡û
>W1810576936 QENW01000001 Alphaproteobacteria Tardiphaga sp. OV697 [QENW] 948932 949008 + Arg CCT [ENA] ¡û
>W1810784375 QRAQ01000002 Alphaproteobacteria Tardiphaga sp. CF115 [QRAQ] 1791952 1792028 + Arg CCT [ENA] ¡û
>ENV09000210 ABSN01030903 Freshwater sediment metagenome lwFormaldehyde_C1 547 471 - Arg CCT [ENA] ¡û
>W1511533278 JYMR01000039 Alphaproteobacteria Bradyrhizobium sp. LTSP849 [JYMR] 101514 101438 - Arg CCT [ENA] ¡û
>W1511533300 JYMS01000018 Alphaproteobacteria Bradyrhizobium sp. LTSP857 [JYMS] 44310 44386 + Arg CCT [ENA] ¡û
>W1511533351 JYMT01000016 Alphaproteobacteria Bradyrhizobium sp. LTSP885 [JYMT] 45418 45342 - Arg CCT [ENA] ¡û
>W1511533408 JYMU01000018 Alphaproteobacteria Bradyrhizobium sp. LTSPM299 [JYMU] 42269 42193 - Arg CCT [ENA] ¡û
>W1610753048 LNEC01000019 Alphaproteobacteria Bradyrhizobiaceae bacterium Ga0074131 [LNEC] 612573 612649 + Arg CCT [ENA] ¡û
>W1610978965 LVYV01000001 Alphaproteobacteria Tardiphaga robiniae [LVYV] 498907 498831 - Arg CCT [ENA] ¡û
>W1710536646 FNTI01000001 Alphaproteobacteria Bradyrhizobium lablabi [FNTI] 3117466 3117390 - Arg CCT [ENA] ¡û
>W1710540664 FNWZ01000002 Alphaproteobacteria Tardiphaga sp. OK245 [FNWZ] 185811 185735 - Arg CCT [ENA] ¡û
>W1710545998 FOBX01000004 Alphaproteobacteria Bradyrhizobium sp. OK095 [FOBX] 134713 134789 + Arg CCT [ENA] ¡û
>W1710568441 FOTP01000006 Alphaproteobacteria Bradyrhizobium sp. NFR13 [FOTP] 72053 71977 - Arg CCT [ENA] ¡û
>W1710594244 FSRD01000001 Alphaproteobacteria Bradyrhizobium erythrophlei [FSRD] 2288043 2288119 + Arg CCT [ENA] ¡û
Identical group No.447020 (1 seq.)
>ENV09000185 ABSN01025978 Freshwater sediment metagenome lwFormaldehyde_C1 195 271 + Arg CCT [ENA] ¡û
Identical group No.447033 (1 seq.)
>ENV09000317 ABSN01049581 Freshwater sediment metagenome lwFormaldehyde_C1 705 632 - Arg CCT [ENA] ¡û
Identical group No.447035 (1 seq.)
>ENV09000342 ABSN01055812 Freshwater sediment metagenome lwFormaldehyde_C1 93 166 + Arg CCT [ENA] ¡û
Identical group No.487516 (5 seq.)
>W1710892981 LNEH01000155 Verrucomicrobiota Verrucomicrobia bacterium Ga0077533 [LNEH] 37685 37610 - Arg CCT [ENA] ¡û
>WENV170556354 CXWL01007464 [CXWL] groundwater metagenome; biofilm material 9236 9311 + Arg CCT [ENA] ¢þ
>WENV170712001 LNFM01009057 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 7331 7406 + Arg CCT [ENA] ¢þ
>ENV09000446 ABSN01070009 Freshwater sediment metagenome lwFormaldehyde_C1 386 311 - Arg CCT [ENA] ¡û
>W1610753247 LNEH01000155 Verrucomicrobiota Verrucomicrobia bacterium Ga0077533 [LNEH] 37685 37610 - Arg CCT [ENA] ¡û
Identical group No.648253 (1 seq.)
>ENV09000092 ABSN01007855 Freshwater sediment metagenome lwFormaldehyde_C1 308 233 - Arg CCT [ENA] ¡û
Identical group No.648269 (1 seq.)
>ENV09000169 ABSN01022251 Freshwater sediment metagenome lwFormaldehyde_C1 146 221 + Arg CCT [ENA] ¡û
Identical group No.648281 (1 seq.)
>ENV09000211 ABSN01031394 Freshwater sediment metagenome lwFormaldehyde_C1 427 502 + Arg CCT [ENA] ¡û
Identical group No.674513 (4 seq.)
>WENV170577610 FSSH01000274 [FSSH] freshwater metagenome; drinking water 341693 341767 + Arg CCT [ENA] ¢þ
>WENV170715012 LNFM01124995 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 13 87 + Arg CCT [ENA] ¢þ
>SRA1052695 SRR035098.254151 454 Sequencing (SRP001819) 329 255 - Arg CCT [SRA]
>ENV09000209 ABSN01030873 Freshwater sediment metagenome lwFormaldehyde_C1 700 774 + Arg CCT [ENA] ¡û
Identical group No.738029 (2 seq.)
>WENV170003365 AGTN01313100 [AGTN] bioreactor metagenome; poplar biomass 182 253 + Arg CCT [ENA] ¢þ
>ENV09000287 ABSN01044559 Freshwater sediment metagenome lwFormaldehyde_C1 42 113 + Arg CCT [ENA] ¡û
Identical group No.776226 (1 seq.)
>ENV09000080 ABSN01006490 Freshwater sediment metagenome lwFormaldehyde_C1 690 762 + Arg CCT [ENA] ¡û
Identical group No.776228 (1 seq.)
>ENV09000104 ABSN01011023 Freshwater sediment metagenome lwFormaldehyde_C1 118 44 - Arg CCT [ENA] ¡û
Identical group No.776236 (1 seq.)
>ENV09000269 ABSN01041784 Freshwater sediment metagenome lwFormaldehyde_C1 465 393 - Arg CCT [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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