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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = CGG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.266132 (2 seq.)
>WENV170556040
CXWL01004029
[CXWL] groundwater metagenome; biofilm material
104438
104361
-
Pro
CGG
[ENA]
¢þ
>ENV09000276
ABSN01042727
Freshwater sediment metagenome lwFormaldehyde_C1
531
454
-
Pro
CGG
[ENA]
¡û
Identical group No.269640 (1 seq.)
>ENV09000050
ABSN01002272
Freshwater sediment metagenome lwFormaldehyde_C1
1271
1196
-
Pro
CGG
[ENA]
¡û
Identical group No.306239 (11 seq.)
>WENV180253728
OBEQ010570716
[OBEQ] groundwater metagenome; groundwater
905
829
-
Pro
CGG
[ENA]
¢þ
>WENV180259973
OBEQ011157739
[OBEQ] groundwater metagenome; groundwater
1025
949
-
Pro
CGG
[ENA]
¢þ
>WENV180691145
OCZS010067595
[OCZS] soil metagenome; soil
1206
1130
-
Pro
CGG
[ENA]
¢þ
>WENV181185463
OELN01001023
[OELN] metagenome; 1998
49
125
+
Pro
CGG
[ENA]
¢þ
>WENV183671549
ORJL011073965
[ORJL] groundwater metagenome; groundwater
1983
1907
-
Pro
CGG
[ENA]
¢þ
>WENV183680621
ORMF010205421
[ORMF] groundwater metagenome; groundwater
2738
2662
-
Pro
CGG
[ENA]
¢þ
>WENV183691703
ORMF011805037
[ORMF] groundwater metagenome; groundwater
152
76
-
Pro
CGG
[ENA]
¢þ
>WENV183749936
PPFU01235871
[PPFU] hypolithon metagenome; Antarctic Hypolithon
225
149
-
Pro
CGG
[ENA]
¢þ
>WENV170988741
MWVY01001634
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
2217
2293
+
Pro
CGG
[ENA]
¢þ
>ENV09000266
ABSN01041228
Freshwater sediment metagenome lwFormaldehyde_C1
347
423
+
Pro
CGG
[ENA]
¡û
>WENV077585
AAFX01066624
Soil microbial communities from Minnesota Farm
97
175
+
Pro
CGG
[ENA]
Identical group No.307265 (4 seq.)
>W131180913
ARNM01000049
Gammaproteobacteria
Solimonas variicoloris DSM 15731 [ARNM]
316785
316861
+
Pro
CGG
[ENA]
¡û
>W131228328
AUFV01000014
Gammaproteobacteria
Solimonas flava DSM 18980 [AUFV]
105030
105106
+
Pro
CGG
[ENA]
¡û
>WENV170557302
CXWL01023538
[CXWL] groundwater metagenome; biofilm material
837
913
+
Pro
CGG
[ENA]
¢þ
>ENV09000079
ABSN01006472
Freshwater sediment metagenome lwFormaldehyde_C1
571
495
-
Pro
CGG
[ENA]
¡û
Identical group No.323836 (5 seq.)
>WENV170972217
MTKX01023286
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1034
1110
+
Pro
CGG
[ENA]
¢þ
>WENV170973810
MTKY01051053
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2030
1954
-
Pro
CGG
[ENA]
¢þ
>WENV170977711
MTKZ01029793
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
587
511
-
Pro
CGG
[ENA]
¢þ
>WENV170979710
MTKZ01103489
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
266
190
-
Pro
CGG
[ENA]
¢þ
>ENV09000416
ABSN01065981
Freshwater sediment metagenome lwFormaldehyde_C1
189
265
+
Pro
CGG
[ENA]
¡û
Identical group No.447003 (1 seq.)
>ENV09000041
ABSN01001974
Freshwater sediment metagenome lwFormaldehyde_C1
1010
1086
+
Pro
CGG
[ENA]
¡û
Identical group No.648288 (1 seq.)
>ENV09000245
ABSN01037110
Freshwater sediment metagenome lwFormaldehyde_C1
225
150
-
Pro
CGG
[ENA]
¡û
Identical group No.648291 (1 seq.)
>ENV09000263
ABSN01040567
Freshwater sediment metagenome lwFormaldehyde_C1
663
589
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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