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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = CTC
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.432962 (3 seq.)
>WENV180255898
OBEQ010765900
[OBEQ] groundwater metagenome; groundwater
85
161
+
Glu
CTC
[ENA]
¢þ
>WENV170573499
FLYL01000575
[FLYL] hot springs metagenome; Sediment
2581
2505
-
Glu
CTC
[ENA]
¢þ
>ENV09000319
ABSN01049922
Freshwater sediment metagenome lwFormaldehyde_C1
458
382
-
Glu
CTC
[ENA]
¡û
Identical group No.447031 (1 seq.)
>ENV09000298
ABSN01046997
Freshwater sediment metagenome lwFormaldehyde_C1
389
465
+
Glu
CTC
[ENA]
¡û
Identical group No.509827 (5 seq.)
>WENV180096310
MTBK01122772
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
949
1023
+
Glu
CTC
[ENA]
¢þ
>WENV183703506
PDVJ01018998
[PDVJ] alkali sediment metagenome; glacial lake sediment
20
94
+
Glu
CTC
[ENA]
¢þ
>WENV170971350
MTKX01004282
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
9375
9301
-
Glu
CTC
[ENA]
¢þ
>WENV170978568
MTKZ01054909
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1639
1713
+
Glu
CTC
[ENA]
¢þ
>ENV09000378
ABSN01059571
Freshwater sediment metagenome lwFormaldehyde_C1
243
169
-
Glu
CTC
[ENA]
¡û
Identical group No.641709 (2 seq.)
>ENV09000203
ABSN01028876
Freshwater sediment metagenome lwFormaldehyde_C1
47
122
+
Glu
CTC
[ENA]
¡û
>ENV09001552
ABSR01027847
Freshwater sediment metagenome lwMethylamine_C1
36
111
+
Glu
CTC
[ENA]
¡û
Identical group No.648247 (1 seq.)
>ENV09000064
ABSN01003666
Freshwater sediment metagenome lwFormaldehyde_C1
800
873
+
Glu
CTC
[ENA]
¡û
Identical group No.648261 (1 seq.)
>ENV09000114
ABSN01013262
Freshwater sediment metagenome lwFormaldehyde_C1
704
631
-
Glu
CTC
[ENA]
¡û
Identical group No.776227 (1 seq.)
>ENV09000099
ABSN01009859
Freshwater sediment metagenome lwFormaldehyde_C1
1
75
+
Glu
CTC
[ENA]
¡û
Identical group No.776233 (1 seq.)
>ENV09000190
ABSN01026407
Freshwater sediment metagenome lwFormaldehyde_C1
460
389
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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