tRNA genes clustered and arranged according to each identical group

Freshwater sediment metagenome lwFormaldehyde_C1

Anticodon = CTG

HIT: 8 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.648274 (1 seq.)
>ENV09000189 ABSN01026407 Freshwater sediment metagenome lwFormaldehyde_C1 623 550 - Gln CTG [ENA] ¡û
Identical group No.648303 (1 seq.)
>ENV09000339 ABSN01055357 Freshwater sediment metagenome lwFormaldehyde_C1 513 441 - Gln CTG [ENA] ¡û
Identical group No.784002 (20 seq.)
>W1710791406 LJNS01000015 Gammaproteobacteria Gammaproteobacteria bacterium SG8_30 [LJNS] 34635 34708 + Gln CTG [ENA] ¡û
>WENV180027170 FTIX01000063 [FTIX] metagenome; soil 3917 3990 + Gln CTG [ENA] ¢þ
>WENV180297325 OBJA01022179 [OBJA] soil metagenome; sediment, water from around vicinity 1360 1287 - Gln CTG [ENA] ¢þ
>WENV181165086 OEIR01574358 [OEIR] soil metagenome; soil 122 195 + Gln CTG [ENA] ¢þ
>WENV181166651 OEIU01000996 [OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex 5382 5309 - Gln CTG [ENA] ¢þ
>WENV181367265 OFPX01000567 [OFPX] freshwater metagenome; Freshwater Lake 193 266 + Gln CTG [ENA] ¢þ
>WENV181369226 OFQO01012987 [OFQO] freshwater metagenome; Freshwater Lake 171 244 + Gln CTG [ENA] ¢þ
>WENV183702688 PDVI01023407 [PDVI] alkali sediment metagenome; glacial lake sediment 76 3 - Gln CTG [ENA] ¢þ
>WENV183702982 PDVJ01001296 [PDVJ] alkali sediment metagenome; glacial lake sediment 2022 1949 - Gln CTG [ENA] ¢þ
>WENV183703514 PDVJ01019625 [PDVJ] alkali sediment metagenome; glacial lake sediment 1241 1314 + Gln CTG [ENA] ¢þ
>WENV170646163 JQGG01004303 [JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each 211 138 - Gln CTG [ENA] ¢þ
>WENV170650056 JRYD01007688 [JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO 402 329 - Gln CTG [ENA] ¢þ
>WENV170662363 JXWW01046553 [JXWW] soil metagenome; rice field; organic GM Plot 518 591 + Gln CTG [ENA] ¢þ
>WENV170706193 LNAP01001621 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 23002 22929 - Gln CTG [ENA] ¢þ
>ENV09000125 ABSN01014781 Freshwater sediment metagenome lwFormaldehyde_C1 541 468 - Gln CTG [ENA] ¡û
>ENV09003108 ADGO01005246 Compost metagenome contig00001 113 40 - Gln CTG [ENA] ¡û
>ENV09003406 ADGO01032655 Compost metagenome contig00001 400 473 + Gln CTG [ENA] ¡û
>W11178647 AGFD01000001 Gammaproteobacteria Thiorhodospira sibirica ATCC 700588 [AGFD] 14111 14038 - Gln CTG [ENA] ¡û
>C161038377 CP011971 Gammaproteobacteria Steroidobacter denitrificans DSM 18526 [CP011971] 1349063 1349136 + Gln CTG [Ensembl] ¡û
>W1610655331 LJNS01000015 Gammaproteobacteria Gammaproteobacteria bacterium SG8_30 [LJNS] 34635 34708 + Gln CTG [ENA] ¡û
Identical group No.784065 (60 seq.)
>W1710892482 LNDU01000043 Nitrospirota Nitrospira sp. Ga0074138 [LNDU] 92644 92571 - Gln CTG [ENA] ¡û
>W1711081813 LSTC01000081 Nitrospirota Nitrospira sp. SCGC AG-212-E16 [LSTC] 4536 4609 + Gln CTG [ENA] ¡û
>C171131437 LT828648 Nitrospirota Nitrospira japonica [LT828648] 545977 545904 - Gln CTG - ¡û
>WENV180039113 LLBY010028242 [LLBY] soil metagenome; soil from tomato rhizosphere 427 354 - Gln CTG [ENA] ¢þ
>WENV180040970 LLBZ010029933 [LLBZ] soil metagenome; soil from tomato rhizosphere 1979 2052 + Gln CTG [ENA] ¢þ
>WENV180041396 LLBZ010120451 [LLBZ] soil metagenome; soil from tomato rhizosphere 5481 5408 - Gln CTG [ENA] ¢þ
>WENV180263848 OBEQ011512575 [OBEQ] groundwater metagenome; groundwater 24625 24698 + Gln CTG [ENA] ¢þ
>WENV180275159 OBHS01029035 [OBHS] metagenome; freshwater sediment 158 85 - Gln CTG [ENA] ¢þ
>WENV180283686 OBID01001643 [OBID] metagenome; sludge 7459 7532 + Gln CTG [ENA] ¢þ
>WENV180295932 OBIZ01459990 [OBIZ] soil metagenome; soil 122 195 + Gln CTG [ENA] ¢þ
>WENV180327271 OBKT01029182 [OBKT] soil metagenome; soil 335 408 + Gln CTG [ENA] ¢þ
>WENV180354120 OBLQ011394625 [OBLQ] soil metagenome; soil 98 25 - Gln CTG [ENA] ¢þ
>WENV180694700 OCZS012589496 [OCZS] soil metagenome; soil 157 230 + Gln CTG [ENA] ¢þ
>WENV181168071 OEIU01149450 [OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex 163 236 + Gln CTG [ENA] ¢þ
>WENV181185019 OELA01000242 [OELA] metagenome; 1998 27413 27486 + Gln CTG [ENA] ¢þ
>WENV181185204 OELE01001071 [OELE] metagenome; 1998 3651 3724 + Gln CTG [ENA] ¢þ
>WENV181188088 OEOE01021118 [OEOE] activated sludge metagenome; Activated Sludge 475 548 + Gln CTG [ENA] ¢þ
>WENV181189959 OEOF01356163 [OEOF] activated sludge metagenome; Activated Sludge 77 150 + Gln CTG [ENA] ¢þ
>WENV181193113 OEPS011466549 [OEPS] soil metagenome; soil 46 119 + Gln CTG [ENA] ¢þ
>WENV181390254 OFRO01032091 [OFRO] wastewater metagenome; Exp Tend NO 10WW 143 70 - Gln CTG [ENA] ¢þ
>WENV183689097 ORMF011388910 [ORMF] groundwater metagenome; groundwater 99 172 + Gln CTG [ENA] ¢þ
>WENV183724737 PJQE01058809 [PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane 166 239 + Gln CTG [ENA] ¢þ
>WENV170551434 CXWJ01007620 [CXWJ] wastewater metagenome; activated sludge 2256 2329 + Gln CTG [ENA] ¢þ
>WENV170553853 CXWK01034562 [CXWK] wastewater metagenome; activated sludge 128 201 + Gln CTG [ENA] ¢þ
>WENV170555706 CXWL01001895 [CXWL] groundwater metagenome; biofilm material 7 80 + Gln CTG [ENA] ¢þ
>WENV170555900 CXWL01003044 [CXWL] groundwater metagenome; biofilm material 75 2 - Gln CTG [ENA] ¢þ
>WENV170556284 CXWL01006656 [CXWL] groundwater metagenome; biofilm material 3805 3732 - Gln CTG [ENA] ¢þ
>WENV170556620 CXWL01011273 [CXWL] groundwater metagenome; biofilm material 111 38 - Gln CTG [ENA] ¢þ
>WENV170556696 CXWL01012221 [CXWL] groundwater metagenome; biofilm material 7689 7616 - Gln CTG [ENA] ¢þ
>WENV170556882 CXWL01015585 [CXWL] groundwater metagenome; biofilm material 5024 4951 - Gln CTG [ENA] ¢þ
>WENV170556931 CXWL01016457 [CXWL] groundwater metagenome; biofilm material 3678 3751 + Gln CTG [ENA] ¢þ
>WENV170557248 CXWL01022098 [CXWL] groundwater metagenome; biofilm material 1053 1126 + Gln CTG [ENA] ¢þ
>WENV170565840 FKKE01001306 [FKKE] freshwater metagenome; freshwater 40020 40093 + Gln CTG [ENA] ¢þ
>WENV170566312 FKKE01015543 [FKKE] freshwater metagenome; freshwater 4411 4484 + Gln CTG [ENA] ¢þ
>WENV170576356 FRDC01000452 [FRDC] freshwater metagenome; water 300886 300959 + Gln CTG [ENA] ¢þ
>WENV170576625 FRDC01001162 [FRDC] freshwater metagenome; water 23982 24055 + Gln CTG [ENA] ¢þ
>WENV170577053 FRDC01002871 [FRDC] freshwater metagenome; water 8667 8594 - Gln CTG [ENA] ¢þ
>WENV170577595 FSSH01000254 [FSSH] freshwater metagenome; drinking water 156053 156126 + Gln CTG [ENA] ¢þ
>WENV170709140 LNFM01000139 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 128657 128730 + Gln CTG [ENA] ¢þ
>WENV170713381 LNFM01029751 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 9688 9615 - Gln CTG [ENA] ¢þ
>WENV170987262 MWVX01156613 [MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil 523 596 + Gln CTG [ENA] ¢þ
>W1910204677 FJVM01000008 Nitrospirota Nitrospira cf. moscoviensis SBR1015 [FJVM] 300886 300959 + Gln CTG [ENA] ¡û
>W1910441968 FWEX01000006 Nitrospirota Nitrospira sp. ND1 [FWEX] 2215392 2215465 + Gln CTG [ENA] ¡û
>W1911494004 OBKC01000244 Unclassified bacterium [OBKC] 442 515 + Gln CTG [ENA] ¡û
>W1911545221 OUNR01000012 Nitrospirota Nitrospira lenta [OUNR] 572424 572497 + Gln CTG [ENA] ¡û
>SRA1002248 SRR001308.326660 Metagenomic characterization of a wastewater treatment plant (SRP000180) 99 172 + Gln CTG [SRA]
>SRA1002274 SRR001308.341379 Metagenomic characterization of a wastewater treatment plant (SRP000180) 99 172 + Gln CTG [SRA]
>C151086607 CP011801 Nitrospirota Nitrospira moscoviensis NSP M-1 [CP011801] 4062825 4062752 - Gln CTG - ¡û
>ENV09000062 ABSN01003118 Freshwater sediment metagenome lwFormaldehyde_C1 539 466 - Gln CTG [ENA] ¡û
>ENV09000234 ABSN01035616 Freshwater sediment metagenome lwFormaldehyde_C1 90 163 + Gln CTG [ENA] ¡û
>C10109737 FP929003 Nitrospirota Nitrospira defluvii [FP929003] 3979077 3979004 - Gln CTG [Ensembl] ¡û
>W1610121166 CZPZ01000023 Nitrospirota Candidatus Nitrospira nitrificans [CZPZ] 168833 168906 + Gln CTG [ENA] ¡û
>W1610121195 CZQA01000001 Nitrospirota Candidatus Nitrospira nitrosa [CZQA] 629034 628961 - Gln CTG [ENA] ¡û
>W1610574677 JZQY01000069 Nitrospirota Nitrospira sp. OLB3 [JZQY] 97 24 - Gln CTG [ENA] ¡û
>W1610752748 LNDU01000043 Nitrospirota Nitrospira sp. Ga0074138 [LNDU] 92644 92571 - Gln CTG [ENA] ¡û
>W1610920648 LSTC01000081 Nitrospirota Nitrospira sp. SCGC AG-212-E16 [LSTC] 4536 4609 + Gln CTG [ENA] ¡û
>WENV077384 AAFX01028998 Soil microbial communities from Minnesota Farm 635 710 + Gln CTG [ENA]
>W1710123870 CZPZ01000023 Nitrospirota Candidatus Nitrospira nitrificans [CZPZ] 168833 168906 + Gln CTG [ENA] ¡û
>W1710123899 CZQA01000001 Nitrospirota Candidatus Nitrospira nitrosa [CZQA] 629034 628961 - Gln CTG [ENA] ¡û
>W1710691912 JZQY01000069 Nitrospirota Nitrospira sp. OLB3 [JZQY] 97 24 - Gln CTG [ENA] ¡û
Identical group No.835750 (1 seq.)
>ENV09000141 ABSN01017610 Freshwater sediment metagenome lwFormaldehyde_C1 526 599 + Gln CTG [ENA] ¡û
Identical group No.835753 (1 seq.)
>ENV09000166 ABSN01021675 Freshwater sediment metagenome lwFormaldehyde_C1 555 628 + Gln CTG [ENA] ¡û
Identical group No.835758 (1 seq.)
>ENV09000318 ABSN01049922 Freshwater sediment metagenome lwFormaldehyde_C1 546 473 - Gln CTG [ENA] ¡û
Identical group No.835762 (1 seq.)
>ENV09000409 ABSN01065584 Freshwater sediment metagenome lwFormaldehyde_C1 790 860 + Gln CTG [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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