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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = CTG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.648274 (1 seq.)
>ENV09000189
ABSN01026407
Freshwater sediment metagenome lwFormaldehyde_C1
623
550
-
Gln
CTG
[ENA]
¡û
Identical group No.648303 (1 seq.)
>ENV09000339
ABSN01055357
Freshwater sediment metagenome lwFormaldehyde_C1
513
441
-
Gln
CTG
[ENA]
¡û
Identical group No.784002 (20 seq.)
>W1710791406
LJNS01000015
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_30 [LJNS]
34635
34708
+
Gln
CTG
[ENA]
¡û
>WENV180027170
FTIX01000063
[FTIX] metagenome; soil
3917
3990
+
Gln
CTG
[ENA]
¢þ
>WENV180297325
OBJA01022179
[OBJA] soil metagenome; sediment, water from around vicinity
1360
1287
-
Gln
CTG
[ENA]
¢þ
>WENV181165086
OEIR01574358
[OEIR] soil metagenome; soil
122
195
+
Gln
CTG
[ENA]
¢þ
>WENV181166651
OEIU01000996
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
5382
5309
-
Gln
CTG
[ENA]
¢þ
>WENV181367265
OFPX01000567
[OFPX] freshwater metagenome; Freshwater Lake
193
266
+
Gln
CTG
[ENA]
¢þ
>WENV181369226
OFQO01012987
[OFQO] freshwater metagenome; Freshwater Lake
171
244
+
Gln
CTG
[ENA]
¢þ
>WENV183702688
PDVI01023407
[PDVI] alkali sediment metagenome; glacial lake sediment
76
3
-
Gln
CTG
[ENA]
¢þ
>WENV183702982
PDVJ01001296
[PDVJ] alkali sediment metagenome; glacial lake sediment
2022
1949
-
Gln
CTG
[ENA]
¢þ
>WENV183703514
PDVJ01019625
[PDVJ] alkali sediment metagenome; glacial lake sediment
1241
1314
+
Gln
CTG
[ENA]
¢þ
>WENV170646163
JQGG01004303
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
211
138
-
Gln
CTG
[ENA]
¢þ
>WENV170650056
JRYD01007688
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
402
329
-
Gln
CTG
[ENA]
¢þ
>WENV170662363
JXWW01046553
[JXWW] soil metagenome; rice field; organic GM Plot
518
591
+
Gln
CTG
[ENA]
¢þ
>WENV170706193
LNAP01001621
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
23002
22929
-
Gln
CTG
[ENA]
¢þ
>ENV09000125
ABSN01014781
Freshwater sediment metagenome lwFormaldehyde_C1
541
468
-
Gln
CTG
[ENA]
¡û
>ENV09003108
ADGO01005246
Compost metagenome contig00001
113
40
-
Gln
CTG
[ENA]
¡û
>ENV09003406
ADGO01032655
Compost metagenome contig00001
400
473
+
Gln
CTG
[ENA]
¡û
>W11178647
AGFD01000001
Gammaproteobacteria
Thiorhodospira sibirica ATCC 700588 [AGFD]
14111
14038
-
Gln
CTG
[ENA]
¡û
>C161038377
CP011971
Gammaproteobacteria
Steroidobacter denitrificans DSM 18526 [CP011971]
1349063
1349136
+
Gln
CTG
[Ensembl]
¡û
>W1610655331
LJNS01000015
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_30 [LJNS]
34635
34708
+
Gln
CTG
[ENA]
¡û
Identical group No.784065 (60 seq.)
>W1710892482
LNDU01000043
Nitrospirota
Nitrospira sp. Ga0074138 [LNDU]
92644
92571
-
Gln
CTG
[ENA]
¡û
>W1711081813
LSTC01000081
Nitrospirota
Nitrospira sp. SCGC AG-212-E16 [LSTC]
4536
4609
+
Gln
CTG
[ENA]
¡û
>C171131437
LT828648
Nitrospirota
Nitrospira japonica [LT828648]
545977
545904
-
Gln
CTG
-
¡û
>WENV180039113
LLBY010028242
[LLBY] soil metagenome; soil from tomato rhizosphere
427
354
-
Gln
CTG
[ENA]
¢þ
>WENV180040970
LLBZ010029933
[LLBZ] soil metagenome; soil from tomato rhizosphere
1979
2052
+
Gln
CTG
[ENA]
¢þ
>WENV180041396
LLBZ010120451
[LLBZ] soil metagenome; soil from tomato rhizosphere
5481
5408
-
Gln
CTG
[ENA]
¢þ
>WENV180263848
OBEQ011512575
[OBEQ] groundwater metagenome; groundwater
24625
24698
+
Gln
CTG
[ENA]
¢þ
>WENV180275159
OBHS01029035
[OBHS] metagenome; freshwater sediment
158
85
-
Gln
CTG
[ENA]
¢þ
>WENV180283686
OBID01001643
[OBID] metagenome; sludge
7459
7532
+
Gln
CTG
[ENA]
¢þ
>WENV180295932
OBIZ01459990
[OBIZ] soil metagenome; soil
122
195
+
Gln
CTG
[ENA]
¢þ
>WENV180327271
OBKT01029182
[OBKT] soil metagenome; soil
335
408
+
Gln
CTG
[ENA]
¢þ
>WENV180354120
OBLQ011394625
[OBLQ] soil metagenome; soil
98
25
-
Gln
CTG
[ENA]
¢þ
>WENV180694700
OCZS012589496
[OCZS] soil metagenome; soil
157
230
+
Gln
CTG
[ENA]
¢þ
>WENV181168071
OEIU01149450
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
163
236
+
Gln
CTG
[ENA]
¢þ
>WENV181185019
OELA01000242
[OELA] metagenome; 1998
27413
27486
+
Gln
CTG
[ENA]
¢þ
>WENV181185204
OELE01001071
[OELE] metagenome; 1998
3651
3724
+
Gln
CTG
[ENA]
¢þ
>WENV181188088
OEOE01021118
[OEOE] activated sludge metagenome; Activated Sludge
475
548
+
Gln
CTG
[ENA]
¢þ
>WENV181189959
OEOF01356163
[OEOF] activated sludge metagenome; Activated Sludge
77
150
+
Gln
CTG
[ENA]
¢þ
>WENV181193113
OEPS011466549
[OEPS] soil metagenome; soil
46
119
+
Gln
CTG
[ENA]
¢þ
>WENV181390254
OFRO01032091
[OFRO] wastewater metagenome; Exp Tend NO 10WW
143
70
-
Gln
CTG
[ENA]
¢þ
>WENV183689097
ORMF011388910
[ORMF] groundwater metagenome; groundwater
99
172
+
Gln
CTG
[ENA]
¢þ
>WENV183724737
PJQE01058809
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
166
239
+
Gln
CTG
[ENA]
¢þ
>WENV170551434
CXWJ01007620
[CXWJ] wastewater metagenome; activated sludge
2256
2329
+
Gln
CTG
[ENA]
¢þ
>WENV170553853
CXWK01034562
[CXWK] wastewater metagenome; activated sludge
128
201
+
Gln
CTG
[ENA]
¢þ
>WENV170555706
CXWL01001895
[CXWL] groundwater metagenome; biofilm material
7
80
+
Gln
CTG
[ENA]
¢þ
>WENV170555900
CXWL01003044
[CXWL] groundwater metagenome; biofilm material
75
2
-
Gln
CTG
[ENA]
¢þ
>WENV170556284
CXWL01006656
[CXWL] groundwater metagenome; biofilm material
3805
3732
-
Gln
CTG
[ENA]
¢þ
>WENV170556620
CXWL01011273
[CXWL] groundwater metagenome; biofilm material
111
38
-
Gln
CTG
[ENA]
¢þ
>WENV170556696
CXWL01012221
[CXWL] groundwater metagenome; biofilm material
7689
7616
-
Gln
CTG
[ENA]
¢þ
>WENV170556882
CXWL01015585
[CXWL] groundwater metagenome; biofilm material
5024
4951
-
Gln
CTG
[ENA]
¢þ
>WENV170556931
CXWL01016457
[CXWL] groundwater metagenome; biofilm material
3678
3751
+
Gln
CTG
[ENA]
¢þ
>WENV170557248
CXWL01022098
[CXWL] groundwater metagenome; biofilm material
1053
1126
+
Gln
CTG
[ENA]
¢þ
>WENV170565840
FKKE01001306
[FKKE] freshwater metagenome; freshwater
40020
40093
+
Gln
CTG
[ENA]
¢þ
>WENV170566312
FKKE01015543
[FKKE] freshwater metagenome; freshwater
4411
4484
+
Gln
CTG
[ENA]
¢þ
>WENV170576356
FRDC01000452
[FRDC] freshwater metagenome; water
300886
300959
+
Gln
CTG
[ENA]
¢þ
>WENV170576625
FRDC01001162
[FRDC] freshwater metagenome; water
23982
24055
+
Gln
CTG
[ENA]
¢þ
>WENV170577053
FRDC01002871
[FRDC] freshwater metagenome; water
8667
8594
-
Gln
CTG
[ENA]
¢þ
>WENV170577595
FSSH01000254
[FSSH] freshwater metagenome; drinking water
156053
156126
+
Gln
CTG
[ENA]
¢þ
>WENV170709140
LNFM01000139
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
128657
128730
+
Gln
CTG
[ENA]
¢þ
>WENV170713381
LNFM01029751
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9688
9615
-
Gln
CTG
[ENA]
¢þ
>WENV170987262
MWVX01156613
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
523
596
+
Gln
CTG
[ENA]
¢þ
>W1910204677
FJVM01000008
Nitrospirota
Nitrospira cf. moscoviensis SBR1015 [FJVM]
300886
300959
+
Gln
CTG
[ENA]
¡û
>W1910441968
FWEX01000006
Nitrospirota
Nitrospira sp. ND1 [FWEX]
2215392
2215465
+
Gln
CTG
[ENA]
¡û
>W1911494004
OBKC01000244
Unclassified
bacterium [OBKC]
442
515
+
Gln
CTG
[ENA]
¡û
>W1911545221
OUNR01000012
Nitrospirota
Nitrospira lenta [OUNR]
572424
572497
+
Gln
CTG
[ENA]
¡û
>SRA1002248
SRR001308.326660
Metagenomic characterization of a wastewater treatment plant (SRP000180)
99
172
+
Gln
CTG
[SRA]
>SRA1002274
SRR001308.341379
Metagenomic characterization of a wastewater treatment plant (SRP000180)
99
172
+
Gln
CTG
[SRA]
>C151086607
CP011801
Nitrospirota
Nitrospira moscoviensis NSP M-1 [CP011801]
4062825
4062752
-
Gln
CTG
-
¡û
>ENV09000062
ABSN01003118
Freshwater sediment metagenome lwFormaldehyde_C1
539
466
-
Gln
CTG
[ENA]
¡û
>ENV09000234
ABSN01035616
Freshwater sediment metagenome lwFormaldehyde_C1
90
163
+
Gln
CTG
[ENA]
¡û
>C10109737
FP929003
Nitrospirota
Nitrospira defluvii [FP929003]
3979077
3979004
-
Gln
CTG
[Ensembl]
¡û
>W1610121166
CZPZ01000023
Nitrospirota
Candidatus Nitrospira nitrificans [CZPZ]
168833
168906
+
Gln
CTG
[ENA]
¡û
>W1610121195
CZQA01000001
Nitrospirota
Candidatus Nitrospira nitrosa [CZQA]
629034
628961
-
Gln
CTG
[ENA]
¡û
>W1610574677
JZQY01000069
Nitrospirota
Nitrospira sp. OLB3 [JZQY]
97
24
-
Gln
CTG
[ENA]
¡û
>W1610752748
LNDU01000043
Nitrospirota
Nitrospira sp. Ga0074138 [LNDU]
92644
92571
-
Gln
CTG
[ENA]
¡û
>W1610920648
LSTC01000081
Nitrospirota
Nitrospira sp. SCGC AG-212-E16 [LSTC]
4536
4609
+
Gln
CTG
[ENA]
¡û
>WENV077384
AAFX01028998
Soil microbial communities from Minnesota Farm
635
710
+
Gln
CTG
[ENA]
>W1710123870
CZPZ01000023
Nitrospirota
Candidatus Nitrospira nitrificans [CZPZ]
168833
168906
+
Gln
CTG
[ENA]
¡û
>W1710123899
CZQA01000001
Nitrospirota
Candidatus Nitrospira nitrosa [CZQA]
629034
628961
-
Gln
CTG
[ENA]
¡û
>W1710691912
JZQY01000069
Nitrospirota
Nitrospira sp. OLB3 [JZQY]
97
24
-
Gln
CTG
[ENA]
¡û
Identical group No.835750 (1 seq.)
>ENV09000141
ABSN01017610
Freshwater sediment metagenome lwFormaldehyde_C1
526
599
+
Gln
CTG
[ENA]
¡û
Identical group No.835753 (1 seq.)
>ENV09000166
ABSN01021675
Freshwater sediment metagenome lwFormaldehyde_C1
555
628
+
Gln
CTG
[ENA]
¡û
Identical group No.835758 (1 seq.)
>ENV09000318
ABSN01049922
Freshwater sediment metagenome lwFormaldehyde_C1
546
473
-
Gln
CTG
[ENA]
¡û
Identical group No.835762 (1 seq.)
>ENV09000409
ABSN01065584
Freshwater sediment metagenome lwFormaldehyde_C1
790
860
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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