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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = CTT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269641 (1 seq.)
>ENV09000059
ABSN01002616
Freshwater sediment metagenome lwFormaldehyde_C1
210
136
-
Lys
CTT
[ENA]
¡û
Identical group No.477635 (65 seq.)
>W1710909739
LNQU01000026
Betaproteobacteria
Aquitalea magnusonii [LNQU]
20482
20407
-
Lys
CTT
[ENA]
¡û
>W1710909800
LNQV01000011
Betaproteobacteria
Aquitalea pelogenes [LNQV]
41041
40966
-
Lys
CTT
[ENA]
¡û
>W1710909802
LNQV01000011
Betaproteobacteria
Aquitalea pelogenes [LNQV]
40847
40772
-
Lys
CTT
[ENA]
¡û
>C171049746
CP016448
Betaproteobacteria
Methyloversatilis sp. RAC08 [CP016448]
2217618
2217543
-
Lys
CTT
-
¡û
>W131163093
AQZM01000008
Betaproteobacteria
Methyloversatilis universalis EHg5 [AQZM]
88886
88811
-
Lys
CTT
[ENA]
¡û
>W131166921
ARCV01000005
Betaproteobacteria
Methyloversatilis thermotolerans NVD [ARCV]
722946
723021
+
Lys
CTT
[ENA]
¡û
>W131170305
ARFL01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ94 [ARFL]
908667
908742
+
Lys
CTT
[ENA]
¡û
>W131186102
ARVV01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ18-153 [ARVV]
4114121
4114046
-
Lys
CTT
[ENA]
¡û
>W131186653
ARWH01000001
Betaproteobacteria
Methyloversatilis universalis Fam500 [ARWH]
3057984
3057909
-
Lys
CTT
[ENA]
¡û
>WENV180099427
NMRC01003382
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
924
849
-
Lys
CTT
[ENA]
¢þ
>WENV181187851
OEOE01000330
[OEOE] activated sludge metagenome; Activated Sludge
7166
7091
-
Lys
CTT
[ENA]
¢þ
>W141216082
AZUP01000001
Betaproteobacteria
Methyloversatilis discipulorum FAM1 [AZUP]
3241978
3242053
+
Lys
CTT
[ENA]
¡û
>WENV183695000
ORMF012317113
[ORMF] groundwater metagenome; groundwater
2668
2593
-
Lys
CTT
[ENA]
¢þ
>WENV170010155
APMI01009839
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
90
15
-
Lys
CTT
[ENA]
¢þ
>WENV170010418
APMI01016678
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1
76
+
Lys
CTT
[ENA]
¢þ
>WENV170010610
APMI01022452
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
6159
6234
+
Lys
CTT
[ENA]
¢þ
>WENV170705385
LNAO01000018
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3801
3876
+
Lys
CTT
[ENA]
¢þ
>WENV170705429
LNAO01000299
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
280
355
+
Lys
CTT
[ENA]
¢þ
>WENV170705432
LNAO01000335
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
593
668
+
Lys
CTT
[ENA]
¢þ
>WENV170705434
LNAO01000336
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
593
668
+
Lys
CTT
[ENA]
¢þ
>WENV170705436
LNAO01000342
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
593
668
+
Lys
CTT
[ENA]
¢þ
>WENV170705529
LNAO01001774
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
280
355
+
Lys
CTT
[ENA]
¢þ
>WENV170705700
LNAP01000145
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4849
4924
+
Lys
CTT
[ENA]
¢þ
>C191005488
AP018823
Betaproteobacteria
Aquitalea magnusonii H3 [AP018823]
4622344
4622419
+
Lys
CTT
-
¡û
>C191005490
AP018823
Betaproteobacteria
Aquitalea magnusonii H3 [AP018823]
4622537
4622612
+
Lys
CTT
-
¡û
>C191005492
AP018823
Betaproteobacteria
Aquitalea magnusonii H3 [AP018823]
4622728
4622803
+
Lys
CTT
-
¡û
>C191064505
CP029539
Betaproteobacteria
Aquitalea sp. USM4 [CP029539]
1229997
1229922
-
Lys
CTT
-
¡û
>C191064507
CP029539
Betaproteobacteria
Aquitalea sp. USM4 [CP029539]
1229803
1229728
-
Lys
CTT
-
¡û
>C191171839
CP039731
Betaproteobacteria
Aquitalea aquatilis THG-DN7.12 [CP039731]
1511878
1511953
+
Lys
CTT
-
¡û
>C191171841
CP039731
Betaproteobacteria
Aquitalea aquatilis THG-DN7.12 [CP039731]
1512070
1512145
+
Lys
CTT
-
¡û
>C191171843
CP039731
Betaproteobacteria
Aquitalea aquatilis THG-DN7.12 [CP039731]
1512260
1512335
+
Lys
CTT
-
¡û
>W1910183569
BJNV01000041
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
38760
38685
-
Lys
CTT
[ENA]
¡û
>W1910183570
BJNV01000041
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
38627
38552
-
Lys
CTT
[ENA]
¡û
>W1910744073
MHZX01000039
Betaproteobacteria
Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 [MHZX]
82
157
+
Lys
CTT
[ENA]
¡û
>W1910828074
MWUM01000012
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
55112
55187
+
Lys
CTT
[ENA]
¡û
>W1910828085
MWUM01000023
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
25401
25476
+
Lys
CTT
[ENA]
¡û
>W1911647771
QAJS01000018
Betaproteobacteria
Aquitalea sp. FJL05 [QAJS]
41645
41570
-
Lys
CTT
[ENA]
¡û
>W1911647773
QAJS01000018
Betaproteobacteria
Aquitalea sp. FJL05 [QAJS]
41453
41378
-
Lys
CTT
[ENA]
¡û
>W1911647775
QAJS01000018
Betaproteobacteria
Aquitalea sp. FJL05 [QAJS]
41263
41188
-
Lys
CTT
[ENA]
¡û
>W1911802895
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sedimenti K1S02-23 [QYUQ]
1969006
1969081
+
Lys
CTT
[ENA]
¡û
>W1810005506
BFBP01000012
Betaproteobacteria
Azospira sp. I13 [BFBP]
19185
19260
+
Lys
CTT
[ENA]
¡û
>SRA1001913
SRR001308.124369
Metagenomic characterization of a wastewater treatment plant (SRP000180)
226
151
-
Lys
CTT
[SRA]
>W1810243386
PPYA02000005
Gammaproteobacteria
Pseudomonas sp. MWU14-2217 (PPYA) MWU14-2217 [PPYA]
266182
266257
+
Lys
CTT
[ENA]
¡û
>W1810243388
PPYA02000005
Gammaproteobacteria
Pseudomonas sp. MWU14-2217 (PPYA) MWU14-2217 [PPYA]
266375
266450
+
Lys
CTT
[ENA]
¡û
>W1810243390
PPYA02000005
Gammaproteobacteria
Pseudomonas sp. MWU14-2217 (PPYA) MWU14-2217 [PPYA]
266565
266640
+
Lys
CTT
[ENA]
¡û
>W1810659486
QJKC01000003
Betaproteobacteria
Aquitalea magnusonii DSM 25134 [QJKC]
42012
41937
-
Lys
CTT
[ENA]
¡û
>W1810659488
QJKC01000003
Betaproteobacteria
Aquitalea magnusonii DSM 25134 [QJKC]
41819
41744
-
Lys
CTT
[ENA]
¡û
>W1810659490
QJKC01000003
Betaproteobacteria
Aquitalea magnusonii DSM 25134 [QJKC]
41630
41555
-
Lys
CTT
[ENA]
¡û
>C151071201
CP010554
Betaproteobacteria
Rugosibacter aromaticivorans Ca6 [CP010554]
2176672
2176747
+
Lys
CTT
[Ensembl]
¡û
>ENV09000048
ABSN01002188
Freshwater sediment metagenome lwFormaldehyde_C1
829
904
+
Lys
CTT
[ENA]
¡û
>WENV035289
AACY021684010
Marine microbial communities from Global Ocean Sampling (GOS)
469
544
+
Lys
CTT
[ENA]
>W11114402
ADDK02000001
Betaproteobacteria
Azospira oryzae PS [ADDK]
1334419
1334344
-
Lys
CTT
[ENA]
¡û
>W1511547633
JZRC01000017
Betaproteobacteria
Aquitalea magnusonii SM6 [JZRC]
29
104
+
Lys
CTT
[ENA]
¡û
>W11162836
AFHG01000057
Betaproteobacteria
Methyloversatilis universalis FAM5 [AFHG]
197652
197727
+
Lys
CTT
[ENA]
¡û
>C121006973
CP003153
Betaproteobacteria
Azospira oryzae PS [CP003153]
551050
550975
-
Lys
CTT
[Ensembl]
¡û
>W1610447582
FKBS01000007
Betaproteobacteria
Bordetella ansorpii [FKBS]
67180
67255
+
Lys
CTT
[ENA]
¡û
>W1610459334
FKIF01000001
Betaproteobacteria
Bordetella ansorpii [FKIF]
811133
811058
-
Lys
CTT
[ENA]
¡û
>W1610768098
LNQU01000026
Betaproteobacteria
Aquitalea magnusonii [LNQU]
20482
20407
-
Lys
CTT
[ENA]
¡û
>W1610768159
LNQV01000011
Betaproteobacteria
Aquitalea pelogenes [LNQV]
41041
40966
-
Lys
CTT
[ENA]
¡û
>W1610768161
LNQV01000011
Betaproteobacteria
Aquitalea pelogenes [LNQV]
40847
40772
-
Lys
CTT
[ENA]
¡û
>W1710087886
BDST01000006
Betaproteobacteria
Aquitalea magnusonii [BDST]
43231
43156
-
Lys
CTT
[ENA]
¡û
>W1710087888
BDST01000006
Betaproteobacteria
Aquitalea magnusonii [BDST]
43038
42963
-
Lys
CTT
[ENA]
¡û
>W1710087890
BDST01000006
Betaproteobacteria
Aquitalea magnusonii [BDST]
42847
42772
-
Lys
CTT
[ENA]
¡û
>W1710447210
FKBS01000007
Betaproteobacteria
Bordetella ansorpii [FKBS]
67180
67255
+
Lys
CTT
[ENA]
¡û
>W1710458962
FKIF01000001
Betaproteobacteria
Bordetella ansorpii [FKIF]
811133
811058
-
Lys
CTT
[ENA]
¡û
Identical group No.599151 (2 seq.)
>WENV181185483
OELO01002254
[OELO] metagenome; 1998
1955
2030
+
Lys
CTT
[ENA]
¢þ
>ENV09000249
ABSN01037656
Freshwater sediment metagenome lwFormaldehyde_C1
533
458
-
Lys
CTT
[ENA]
¡û
Identical group No.646007 (2 seq.)
>WENV170551837
CXWJ01025001
[CXWJ] wastewater metagenome; activated sludge
482
407
-
Lys
CTT
[ENA]
¢þ
>ENV09000195
ABSN01026954
Freshwater sediment metagenome lwFormaldehyde_C1
251
178
-
Lys
CTT
[ENA]
¡û
Identical group No.648252 (1 seq.)
>ENV09000085
ABSN01006875
Freshwater sediment metagenome lwFormaldehyde_C1
575
502
-
Lys
CTT
[ENA]
¡û
Identical group No.648265 (1 seq.)
>ENV09000146
ABSN01018596
Freshwater sediment metagenome lwFormaldehyde_C1
642
567
-
Lys
CTT
[ENA]
¡û
Identical group No.648272 (1 seq.)
>ENV09000178
ABSN01023591
Freshwater sediment metagenome lwFormaldehyde_C1
259
184
-
Lys
CTT
[ENA]
¡û
Identical group No.648286 (1 seq.)
>ENV09000241
ABSN01036310
Freshwater sediment metagenome lwFormaldehyde_C1
217
292
+
Lys
CTT
[ENA]
¡û
Identical group No.648293 (1 seq.)
>ENV09000282
ABSN01044269
Freshwater sediment metagenome lwFormaldehyde_C1
147
72
-
Lys
CTT
[ENA]
¡û
Identical group No.648295 (1 seq.)
>ENV09000296
ABSN01046857
Freshwater sediment metagenome lwFormaldehyde_C1
558
483
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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