tRNA genes clustered and arranged according to each identical group

Freshwater sediment metagenome lwFormaldehyde_C1

Anticodon = CTT

HIT: 10 Group(s).
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.269641 (1 seq.)
>ENV09000059 ABSN01002616 Freshwater sediment metagenome lwFormaldehyde_C1 210 136 - Lys CTT [ENA] ¡û
Identical group No.477635 (65 seq.)
>W1710909739 LNQU01000026 Betaproteobacteria Aquitalea magnusonii [LNQU] 20482 20407 - Lys CTT [ENA] ¡û
>W1710909800 LNQV01000011 Betaproteobacteria Aquitalea pelogenes [LNQV] 41041 40966 - Lys CTT [ENA] ¡û
>W1710909802 LNQV01000011 Betaproteobacteria Aquitalea pelogenes [LNQV] 40847 40772 - Lys CTT [ENA] ¡û
>C171049746 CP016448 Betaproteobacteria Methyloversatilis sp. RAC08 [CP016448] 2217618 2217543 - Lys CTT - ¡û
>W131163093 AQZM01000008 Betaproteobacteria Methyloversatilis universalis EHg5 [AQZM] 88886 88811 - Lys CTT [ENA] ¡û
>W131166921 ARCV01000005 Betaproteobacteria Methyloversatilis thermotolerans NVD [ARCV] 722946 723021 + Lys CTT [ENA] ¡û
>W131170305 ARFL01000001 Betaproteobacteria Methyloversatilis discipulorum RZ94 [ARFL] 908667 908742 + Lys CTT [ENA] ¡û
>W131186102 ARVV01000001 Betaproteobacteria Methyloversatilis discipulorum RZ18-153 [ARVV] 4114121 4114046 - Lys CTT [ENA] ¡û
>W131186653 ARWH01000001 Betaproteobacteria Methyloversatilis universalis Fam500 [ARWH] 3057984 3057909 - Lys CTT [ENA] ¡û
>WENV180099427 NMRC01003382 [NMRC] plant metagenome; fluid collected inside the plant's pitcher 924 849 - Lys CTT [ENA] ¢þ
>WENV181187851 OEOE01000330 [OEOE] activated sludge metagenome; Activated Sludge 7166 7091 - Lys CTT [ENA] ¢þ
>W141216082 AZUP01000001 Betaproteobacteria Methyloversatilis discipulorum FAM1 [AZUP] 3241978 3242053 + Lys CTT [ENA] ¡û
>WENV183695000 ORMF012317113 [ORMF] groundwater metagenome; groundwater 2668 2593 - Lys CTT [ENA] ¢þ
>WENV170010155 APMI01009839 [APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater 90 15 - Lys CTT [ENA] ¢þ
>WENV170010418 APMI01016678 [APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater 1 76 + Lys CTT [ENA] ¢þ
>WENV170010610 APMI01022452 [APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater 6159 6234 + Lys CTT [ENA] ¢þ
>WENV170705385 LNAO01000018 [LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 3801 3876 + Lys CTT [ENA] ¢þ
>WENV170705429 LNAO01000299 [LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 280 355 + Lys CTT [ENA] ¢þ
>WENV170705432 LNAO01000335 [LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 593 668 + Lys CTT [ENA] ¢þ
>WENV170705434 LNAO01000336 [LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 593 668 + Lys CTT [ENA] ¢þ
>WENV170705436 LNAO01000342 [LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 593 668 + Lys CTT [ENA] ¢þ
>WENV170705529 LNAO01001774 [LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 280 355 + Lys CTT [ENA] ¢þ
>WENV170705700 LNAP01000145 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 4849 4924 + Lys CTT [ENA] ¢þ
>C191005488 AP018823 Betaproteobacteria Aquitalea magnusonii H3 [AP018823] 4622344 4622419 + Lys CTT - ¡û
>C191005490 AP018823 Betaproteobacteria Aquitalea magnusonii H3 [AP018823] 4622537 4622612 + Lys CTT - ¡û
>C191005492 AP018823 Betaproteobacteria Aquitalea magnusonii H3 [AP018823] 4622728 4622803 + Lys CTT - ¡û
>C191064505 CP029539 Betaproteobacteria Aquitalea sp. USM4 [CP029539] 1229997 1229922 - Lys CTT - ¡û
>C191064507 CP029539 Betaproteobacteria Aquitalea sp. USM4 [CP029539] 1229803 1229728 - Lys CTT - ¡û
>C191171839 CP039731 Betaproteobacteria Aquitalea aquatilis THG-DN7.12 [CP039731] 1511878 1511953 + Lys CTT - ¡û
>C191171841 CP039731 Betaproteobacteria Aquitalea aquatilis THG-DN7.12 [CP039731] 1512070 1512145 + Lys CTT - ¡û
>C191171843 CP039731 Betaproteobacteria Aquitalea aquatilis THG-DN7.12 [CP039731] 1512260 1512335 + Lys CTT - ¡û
>W1910183569 BJNV01000041 Betaproteobacteria Zoogloea ramigera NBRC 15342 [BJNV] 38760 38685 - Lys CTT [ENA] ¡û
>W1910183570 BJNV01000041 Betaproteobacteria Zoogloea ramigera NBRC 15342 [BJNV] 38627 38552 - Lys CTT [ENA] ¡û
>W1910744073 MHZX01000039 Betaproteobacteria Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 [MHZX] 82 157 + Lys CTT [ENA] ¡û
>W1910828074 MWUM01000012 Betaproteobacteria Zoogloea sp. LCSB751 [MWUM] 55112 55187 + Lys CTT [ENA] ¡û
>W1910828085 MWUM01000023 Betaproteobacteria Zoogloea sp. LCSB751 [MWUM] 25401 25476 + Lys CTT [ENA] ¡û
>W1911647771 QAJS01000018 Betaproteobacteria Aquitalea sp. FJL05 [QAJS] 41645 41570 - Lys CTT [ENA] ¡û
>W1911647773 QAJS01000018 Betaproteobacteria Aquitalea sp. FJL05 [QAJS] 41453 41378 - Lys CTT [ENA] ¡û
>W1911647775 QAJS01000018 Betaproteobacteria Aquitalea sp. FJL05 [QAJS] 41263 41188 - Lys CTT [ENA] ¡û
>W1911802895 QYUQ01000002 Betaproteobacteria Noviherbaspirillum sedimenti K1S02-23 [QYUQ] 1969006 1969081 + Lys CTT [ENA] ¡û
>W1810005506 BFBP01000012 Betaproteobacteria Azospira sp. I13 [BFBP] 19185 19260 + Lys CTT [ENA] ¡û
>SRA1001913 SRR001308.124369 Metagenomic characterization of a wastewater treatment plant (SRP000180) 226 151 - Lys CTT [SRA]
>W1810243386 PPYA02000005 Gammaproteobacteria Pseudomonas sp. MWU14-2217 (PPYA) MWU14-2217 [PPYA] 266182 266257 + Lys CTT [ENA] ¡û
>W1810243388 PPYA02000005 Gammaproteobacteria Pseudomonas sp. MWU14-2217 (PPYA) MWU14-2217 [PPYA] 266375 266450 + Lys CTT [ENA] ¡û
>W1810243390 PPYA02000005 Gammaproteobacteria Pseudomonas sp. MWU14-2217 (PPYA) MWU14-2217 [PPYA] 266565 266640 + Lys CTT [ENA] ¡û
>W1810659486 QJKC01000003 Betaproteobacteria Aquitalea magnusonii DSM 25134 [QJKC] 42012 41937 - Lys CTT [ENA] ¡û
>W1810659488 QJKC01000003 Betaproteobacteria Aquitalea magnusonii DSM 25134 [QJKC] 41819 41744 - Lys CTT [ENA] ¡û
>W1810659490 QJKC01000003 Betaproteobacteria Aquitalea magnusonii DSM 25134 [QJKC] 41630 41555 - Lys CTT [ENA] ¡û
>C151071201 CP010554 Betaproteobacteria Rugosibacter aromaticivorans Ca6 [CP010554] 2176672 2176747 + Lys CTT [Ensembl] ¡û
>ENV09000048 ABSN01002188 Freshwater sediment metagenome lwFormaldehyde_C1 829 904 + Lys CTT [ENA] ¡û
>WENV035289 AACY021684010 Marine microbial communities from Global Ocean Sampling (GOS) 469 544 + Lys CTT [ENA]
>W11114402 ADDK02000001 Betaproteobacteria Azospira oryzae PS [ADDK] 1334419 1334344 - Lys CTT [ENA] ¡û
>W1511547633 JZRC01000017 Betaproteobacteria Aquitalea magnusonii SM6 [JZRC] 29 104 + Lys CTT [ENA] ¡û
>W11162836 AFHG01000057 Betaproteobacteria Methyloversatilis universalis FAM5 [AFHG] 197652 197727 + Lys CTT [ENA] ¡û
>C121006973 CP003153 Betaproteobacteria Azospira oryzae PS [CP003153] 551050 550975 - Lys CTT [Ensembl] ¡û
>W1610447582 FKBS01000007 Betaproteobacteria Bordetella ansorpii [FKBS] 67180 67255 + Lys CTT [ENA] ¡û
>W1610459334 FKIF01000001 Betaproteobacteria Bordetella ansorpii [FKIF] 811133 811058 - Lys CTT [ENA] ¡û
>W1610768098 LNQU01000026 Betaproteobacteria Aquitalea magnusonii [LNQU] 20482 20407 - Lys CTT [ENA] ¡û
>W1610768159 LNQV01000011 Betaproteobacteria Aquitalea pelogenes [LNQV] 41041 40966 - Lys CTT [ENA] ¡û
>W1610768161 LNQV01000011 Betaproteobacteria Aquitalea pelogenes [LNQV] 40847 40772 - Lys CTT [ENA] ¡û
>W1710087886 BDST01000006 Betaproteobacteria Aquitalea magnusonii [BDST] 43231 43156 - Lys CTT [ENA] ¡û
>W1710087888 BDST01000006 Betaproteobacteria Aquitalea magnusonii [BDST] 43038 42963 - Lys CTT [ENA] ¡û
>W1710087890 BDST01000006 Betaproteobacteria Aquitalea magnusonii [BDST] 42847 42772 - Lys CTT [ENA] ¡û
>W1710447210 FKBS01000007 Betaproteobacteria Bordetella ansorpii [FKBS] 67180 67255 + Lys CTT [ENA] ¡û
>W1710458962 FKIF01000001 Betaproteobacteria Bordetella ansorpii [FKIF] 811133 811058 - Lys CTT [ENA] ¡û
Identical group No.599151 (2 seq.)
>WENV181185483 OELO01002254 [OELO] metagenome; 1998 1955 2030 + Lys CTT [ENA] ¢þ
>ENV09000249 ABSN01037656 Freshwater sediment metagenome lwFormaldehyde_C1 533 458 - Lys CTT [ENA] ¡û
Identical group No.646007 (2 seq.)
>WENV170551837 CXWJ01025001 [CXWJ] wastewater metagenome; activated sludge 482 407 - Lys CTT [ENA] ¢þ
>ENV09000195 ABSN01026954 Freshwater sediment metagenome lwFormaldehyde_C1 251 178 - Lys CTT [ENA] ¡û
Identical group No.648252 (1 seq.)
>ENV09000085 ABSN01006875 Freshwater sediment metagenome lwFormaldehyde_C1 575 502 - Lys CTT [ENA] ¡û
Identical group No.648265 (1 seq.)
>ENV09000146 ABSN01018596 Freshwater sediment metagenome lwFormaldehyde_C1 642 567 - Lys CTT [ENA] ¡û
Identical group No.648272 (1 seq.)
>ENV09000178 ABSN01023591 Freshwater sediment metagenome lwFormaldehyde_C1 259 184 - Lys CTT [ENA] ¡û
Identical group No.648286 (1 seq.)
>ENV09000241 ABSN01036310 Freshwater sediment metagenome lwFormaldehyde_C1 217 292 + Lys CTT [ENA] ¡û
Identical group No.648293 (1 seq.)
>ENV09000282 ABSN01044269 Freshwater sediment metagenome lwFormaldehyde_C1 147 72 - Lys CTT [ENA] ¡û
Identical group No.648295 (1 seq.)
>ENV09000296 ABSN01046857 Freshwater sediment metagenome lwFormaldehyde_C1 558 483 - Lys CTT [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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