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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = GAC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287805 (29 seq.)
>W1711409310
MGOC01000071
Chloroflexota
Chloroflexi bacterium RBG_16_69_14 [MGOC]
24378
24302
-
Val
GAC
[ENA]
¡û
>WENV180038675
LLBY010001671
[LLBY] soil metagenome; soil from tomato rhizosphere
4677
4751
+
Val
GAC
[ENA]
¢þ
>WENV180039089
LLBY010026233
[LLBY] soil metagenome; soil from tomato rhizosphere
2841
2917
+
Val
GAC
[ENA]
¢þ
>WENV180039090
LLBY010026234
[LLBY] soil metagenome; soil from tomato rhizosphere
952
1028
+
Val
GAC
[ENA]
¢þ
>WENV180041238
LLBZ010070906
[LLBZ] soil metagenome; soil from tomato rhizosphere
75
1
-
Val
GAC
[ENA]
¢þ
>WENV180291281
OBIV01030531
[OBIV] soil metagenome; Clay
387
463
+
Val
GAC
[ENA]
¢þ
>WENV180304268
OBJH01194294
[OBJH] soil metagenome; soil
98
22
-
Val
GAC
[ENA]
¢þ
>WENV180308709
OBJR01133982
[OBJR] soil metagenome; soil
218
294
+
Val
GAC
[ENA]
¢þ
>WENV180320545
OBKO01083909
[OBKO] soil metagenome; Alaskan Permafrost
58
134
+
Val
GAC
[ENA]
¢þ
>WENV180320824
OBKQ01027922
[OBKQ] soil metagenome; Clay
212
136
-
Val
GAC
[ENA]
¢þ
>WENV180327364
OBKT01079363
[OBKT] soil metagenome; soil
126
50
-
Val
GAC
[ENA]
¢þ
>WENV180331367
OBLA01016234
[OBLA] soil metagenome; Alaskan Permafrost
115
191
+
Val
GAC
[ENA]
¢þ
>WENV180342927
OBLJ01200210
[OBLJ] soil metagenome; Clay
187
111
-
Val
GAC
[ENA]
¢þ
>WENV180344368
OBLK01368714
[OBLK] soil metagenome; Clay
87
11
-
Val
GAC
[ENA]
¢þ
>WENV180352917
OBLQ010436327
[OBLQ] soil metagenome; soil
170
94
-
Val
GAC
[ENA]
¢þ
>WENV180692482
OCZS010564658
[OCZS] soil metagenome; soil
175
99
-
Val
GAC
[ENA]
¢þ
>WENV181165925
OEIS01295784
[OEIS] soil metagenome; soil
158
82
-
Val
GAC
[ENA]
¢þ
>WENV181168373
OEIU01313717
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
264
188
-
Val
GAC
[ENA]
¢þ
>WENV181184460
OEKD01000216
[OEKD] metagenome; 1998
16426
16502
+
Val
GAC
[ENA]
¢þ
>WENV181184517
OEKI01000179
[OEKI] metagenome; 1998
821
897
+
Val
GAC
[ENA]
¢þ
>WENV181298327
OFHL01079326
[OFHL] soil metagenome; Clay
241
165
-
Val
GAC
[ENA]
¢þ
>WENV183749015
PPFU01108327
[PPFU] hypolithon metagenome; Antarctic Hypolithon
645
569
-
Val
GAC
[ENA]
¢þ
>WENV183749283
PPFU01146824
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1590
1514
-
Val
GAC
[ENA]
¢þ
>WENV170954782
MJUI01057080
[MJUI] soil metagenome; viral particles from soil sample MG3
82
158
+
Val
GAC
[ENA]
¢þ
>ENV09000176
ABSN01023567
Freshwater sediment metagenome lwFormaldehyde_C1
841
765
-
Val
GAC
[ENA]
¡û
>ENV09000623
ABSP01003610
Freshwater sediment metagenome lwMethane_C1
22
98
+
Val
GAC
[ENA]
¡û
>W1610594054
LDXM01000006
Chloroflexota
Chloroflexi bacterium CSP1-4 [LDXM]
42124
42048
-
Val
GAC
[ENA]
¡û
>WENV077562
AAFX01062326
Soil microbial communities from Minnesota Farm
210
134
-
Val
GAC
[ENA]
>W1710713506
LDXM01000006
Chloroflexota
Chloroflexi bacterium CSP1-4 [LDXM]
42124
42048
-
Val
GAC
[ENA]
¡û
Identical group No.447006 (1 seq.)
>ENV09000058
ABSN01002542
Freshwater sediment metagenome lwFormaldehyde_C1
1311
1387
+
Val
GAC
[ENA]
¡û
Identical group No.735930 (8 seq.)
>WENV180296029
OBIZ01579501
[OBIZ] soil metagenome; soil
67
141
+
Val
GAC
[ENA]
¢þ
>WENV180351206
OBLQ010033105
[OBLQ] soil metagenome; soil
1419
1345
-
Val
GAC
[ENA]
¢þ
>WENV170556223
CXWL01005754
[CXWL] groundwater metagenome; biofilm material
5383
5309
-
Val
GAC
[ENA]
¢þ
>WENV170557055
CXWL01018018
[CXWL] groundwater metagenome; biofilm material
2469
2395
-
Val
GAC
[ENA]
¢þ
>WENV170557098
CXWL01019046
[CXWL] groundwater metagenome; biofilm material
351
425
+
Val
GAC
[ENA]
¢þ
>WENV170557099
CXWL01019047
[CXWL] groundwater metagenome; biofilm material
1118
1044
-
Val
GAC
[ENA]
¢þ
>WENV170557659
CXWL01033262
[CXWL] groundwater metagenome; biofilm material
1879
1953
+
Val
GAC
[ENA]
¢þ
>ENV09000167
ABSN01022130
Freshwater sediment metagenome lwFormaldehyde_C1
170
244
+
Val
GAC
[ENA]
¡û
Identical group No.760524 (3 seq.)
>WENV170557991
CXWL01045491
[CXWL] groundwater metagenome; biofilm material
1989
2063
+
Val
GAC
[ENA]
¢þ
>WENV170558392
CXWL01067306
[CXWL] groundwater metagenome; biofilm material
29
103
+
Val
GAC
[ENA]
¢þ
>ENV09000150
ABSN01018754
Freshwater sediment metagenome lwFormaldehyde_C1
563
637
+
Val
GAC
[ENA]
¡û
Identical group No.776245 (1 seq.)
>ENV09000396
ABSN01063372
Freshwater sediment metagenome lwFormaldehyde_C1
554
480
-
Val
GAC
[ENA]
¡û
Identical group No.835755 (1 seq.)
>ENV09000230
ABSN01034956
Freshwater sediment metagenome lwFormaldehyde_C1
643
713
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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