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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = GAG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87551 (3 seq.)
>W1711394755
MEQQ01000141
Betaproteobacteria
Betaproteobacteria bacterium RBG_16_66_20 [MEQQ]
7091
7178
+
Leu
GAG
[ENA]
¡û
>WENV183683258
ORMF010555043
[ORMF] groundwater metagenome; groundwater
713
626
-
Leu
GAG
[ENA]
¢þ
>ENV09000375
ABSN01059104
Freshwater sediment metagenome lwFormaldehyde_C1
126
39
-
Leu
GAG
[ENA]
¡û
Identical group No.115848 (14 seq.)
>WENV180113766
OAPR01021043
[OAPR] marine metagenome; seawater
259
175
-
Leu
GAG
[ENA]
¢þ
>WENV180357405
OBNN01007597
[OBNN] marine metagenome; Coastal water
338
254
-
Leu
GAG
[ENA]
¢þ
>WENV180591555
OCOV01045986
[OCOV] marine metagenome; ENVO:01000301
240
324
+
Leu
GAG
[ENA]
¢þ
>WENV181368972
OFQN01006691
[OFQN] freshwater metagenome; Freshwater Lake
192
276
+
Leu
GAG
[ENA]
¢þ
>WENV181370036
OFQR01007484
[OFQR] freshwater metagenome; Freshwater Lake
158
74
-
Leu
GAG
[ENA]
¢þ
>WENV181377011
OFRA01001270
[OFRA] wastewater metagenome; Lake Maggiore Verbania
447
531
+
Leu
GAG
[ENA]
¢þ
>WENV181380050
OFRD01024898
[OFRD] wastewater metagenome; Exp Tend CN 100WW
216
300
+
Leu
GAG
[ENA]
¢þ
>WENV181385976
OFRL01000253
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
15969
15885
-
Leu
GAG
[ENA]
¢þ
>WENV181400069
OFSF01001186
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1190
1274
+
Leu
GAG
[ENA]
¢þ
>WENV170572017
FLOH01000461
[FLOH] marine metagenome; water
40253
40337
+
Leu
GAG
[ENA]
¢þ
>WENV170602738
FUWD010260818
[FUWD] metagenome; unknown
31
115
+
Leu
GAG
[ENA]
¢þ
>C181018731
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
1072789
1072873
+
Leu
GAG
-
¡û
>C181021118
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
678883
678799
-
Leu
GAG
-
¡û
>ENV09000258
ABSN01040050
Freshwater sediment metagenome lwFormaldehyde_C1
849
765
-
Leu
GAG
[ENA]
¡û
Identical group No.146361 (2 seq.)
>WENV170641459
JFJP01037039
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
5422
5508
+
Leu
GAG
[ENA]
¢þ
>ENV09000145
ABSN01017880
Freshwater sediment metagenome lwFormaldehyde_C1
526
440
-
Leu
GAG
[ENA]
¡û
Identical group No.152654 (1 seq.)
>ENV09000323
ABSN01050300
Freshwater sediment metagenome lwFormaldehyde_C1
805
722
-
Leu
GAG
[ENA]
¡û
Identical group No.152655 (1 seq.)
>ENV09000387
ABSN01062692
Freshwater sediment metagenome lwFormaldehyde_C1
450
535
+
Leu
GAG
[ENA]
¡û
Identical group No.201814 (5 seq.)
>WENV180284922
OBID01161036
[OBID] metagenome; sludge
344
426
+
Leu
GAG
[ENA]
¢þ
>WENV183679506
ORMF010070667
[ORMF] groundwater metagenome; groundwater
384
466
+
Leu
GAG
[ENA]
¢þ
>WENV170556274
CXWL01006526
[CXWL] groundwater metagenome; biofilm material
4775
4859
+
Leu
GAG
[ENA]
¢þ
>WENV170640118
JFJP01013094
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2251
2169
-
Leu
GAG
[ENA]
¢þ
>ENV09000244
ABSN01036405
Freshwater sediment metagenome lwFormaldehyde_C1
252
170
-
Leu
GAG
[ENA]
¡û
Identical group No.217046 (1 seq.)
>ENV09000247
ABSN01037277
Freshwater sediment metagenome lwFormaldehyde_C1
499
415
-
Leu
GAG
[ENA]
¡û
Identical group No.217049 (1 seq.)
>ENV09000306
ABSN01048602
Freshwater sediment metagenome lwFormaldehyde_C1
143
227
+
Leu
GAG
[ENA]
¡û
Identical group No.217051 (1 seq.)
>ENV09000335
ABSN01054832
Freshwater sediment metagenome lwFormaldehyde_C1
117
34
-
Leu
GAG
[ENA]
¡û
Identical group No.228250 (2 seq.)
>WENV170007299
AMWB02103824
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
3265
3345
+
Leu
GAG
[ENA]
¢þ
>ENV09000238
ABSN01036057
Freshwater sediment metagenome lwFormaldehyde_C1
130
212
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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