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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = GTG
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152657 (1 seq.)
>ENV09000425
ABSN01066742
Freshwater sediment metagenome lwFormaldehyde_C1
324
408
+
His
GTG
[ENA]
¡û
Identical group No.339966 (18 seq.)
>W1711081823
LSTC01000110
Nitrospirota
Nitrospira sp. SCGC AG-212-E16 [LSTC]
220
144
-
His
GTG
[ENA]
¡û
>WENV180249889
OBEQ010238782
[OBEQ] groundwater metagenome; groundwater
129712
129636
-
His
GTG
[ENA]
¢þ
>WENV180283548
OBID01000641
[OBID] metagenome; sludge
10823
10747
-
His
GTG
[ENA]
¢þ
>WENV180584019
OCNM01028478
[OCNM] soil metagenome; soil
146
222
+
His
GTG
[ENA]
¢þ
>WENV181184926
OEKW01000476
[OEKW] metagenome; 1998
15985
16061
+
His
GTG
[ENA]
¢þ
>WENV181185181
OELE01000353
[OELE] metagenome; 1998
4863
4939
+
His
GTG
[ENA]
¢þ
>WENV183684575
ORMF010725372
[ORMF] groundwater metagenome; groundwater
251
175
-
His
GTG
[ENA]
¢þ
>WENV170553322
CXWK01014728
[CXWK] wastewater metagenome; activated sludge
8529
8453
-
His
GTG
[ENA]
¢þ
>WENV170555596
CXWL01001297
[CXWL] groundwater metagenome; biofilm material
99391
99467
+
His
GTG
[ENA]
¢þ
>WENV170556109
CXWL01004918
[CXWL] groundwater metagenome; biofilm material
85
9
-
His
GTG
[ENA]
¢þ
>WENV170556741
CXWL01013007
[CXWL] groundwater metagenome; biofilm material
544
468
-
His
GTG
[ENA]
¢þ
>WENV170556776
CXWL01013519
[CXWL] groundwater metagenome; biofilm material
15410
15486
+
His
GTG
[ENA]
¢þ
>WENV170974829
MTKY01076780
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
906
982
+
His
GTG
[ENA]
¢þ
>W1910441966
FWEX01000006
Nitrospirota
Nitrospira sp. ND1 [FWEX]
2034567
2034643
+
His
GTG
[ENA]
¡û
>ENV09000040
ABSN01001947
Freshwater sediment metagenome lwFormaldehyde_C1
166
242
+
His
GTG
[ENA]
¡û
>ENV09001020
ABSQ01017169
Freshwater sediment metagenome lwMethenol_C1
218
142
-
His
GTG
[ENA]
¡û
>C10109735
FP929003
Nitrospirota
Nitrospira defluvii [FP929003]
4169103
4169027
-
His
GTG
[Ensembl]
¡û
>W1610920658
LSTC01000110
Nitrospirota
Nitrospira sp. SCGC AG-212-E16 [LSTC]
220
144
-
His
GTG
[ENA]
¡û
Identical group No.447011 (1 seq.)
>ENV09000127
ABSN01014977
Freshwater sediment metagenome lwFormaldehyde_C1
746
821
+
His
GTG
[ENA]
¡û
Identical group No.447021 (1 seq.)
>ENV09000187
ABSN01026169
Freshwater sediment metagenome lwFormaldehyde_C1
611
687
+
His
GTG
[ENA]
¡û
Identical group No.648275 (1 seq.)
>ENV09000192
ABSN01026835
Freshwater sediment metagenome lwFormaldehyde_C1
505
430
-
His
GTG
[ENA]
¡û
Identical group No.648282 (1 seq.)
>ENV09000215
ABSN01031549
Freshwater sediment metagenome lwFormaldehyde_C1
100
25
-
His
GTG
[ENA]
¡û
Identical group No.648301 (1 seq.)
>ENV09000331
ABSN01053497
Freshwater sediment metagenome lwFormaldehyde_C1
439
514
+
His
GTG
[ENA]
¡û
Identical group No.711765 (3 seq.)
>WENV181369078
OFQN01020884
[OFQN] freshwater metagenome; Freshwater Lake
320
246
-
His
GTG
[ENA]
¢þ
>C181078373
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
660138
660212
+
His
GTG
-
¡û
>ENV09000392
ABSN01063059
Freshwater sediment metagenome lwFormaldehyde_C1
419
345
-
His
GTG
[ENA]
¡û
Identical group No.729260 (3 seq.)
>WENV180034044
FTKM01244323
[FTKM] metagenome; soil
123
49
-
His
GTG
[ENA]
¢þ
>WENV180344778
OBLL01183918
[OBLL] soil metagenome; soil
194
267
+
His
GTG
[ENA]
¢þ
>ENV09000365
ABSN01058129
Freshwater sediment metagenome lwFormaldehyde_C1
312
238
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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