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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = TAA
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45268 (1 seq.)
>ENV09000218
ABSN01032484
Freshwater sediment metagenome lwFormaldehyde_C1
151
241
+
Leu
TAA
[ENA]
¡û
Identical group No.72027 (1 seq.)
>ENV09000256
ABSN01039321
Freshwater sediment metagenome lwFormaldehyde_C1
77
166
+
Leu
TAA
[ENA]
¡û
Identical group No.86001 (2 seq.)
>ENV09000071
ABSN01004467
Freshwater sediment metagenome lwFormaldehyde_C1
423
511
+
Leu
TAA
[ENA]
¡û
>ENV09000597
ABSP01001503
Freshwater sediment metagenome lwMethane_C1
242
154
-
Leu
TAA
[ENA]
¡û
Identical group No.86486 (1 seq.)
>ENV09000083
ABSN01006787
Freshwater sediment metagenome lwFormaldehyde_C1
265
177
-
Leu
TAA
[ENA]
¡û
Identical group No.86487 (1 seq.)
>ENV09000124
ABSN01014679
Freshwater sediment metagenome lwFormaldehyde_C1
111
199
+
Leu
TAA
[ENA]
¡û
Identical group No.86489 (1 seq.)
>ENV09000273
ABSN01042135
Freshwater sediment metagenome lwFormaldehyde_C1
399
484
+
Leu
TAA
[ENA]
¡û
Identical group No.86490 (1 seq.)
>ENV09000340
ABSN01055529
Freshwater sediment metagenome lwFormaldehyde_C1
275
360
+
Leu
TAA
[ENA]
¡û
Identical group No.111656 (1 seq.)
>ENV09000077
ABSN01006294
Freshwater sediment metagenome lwFormaldehyde_C1
101
188
+
Leu
TAA
[ENA]
¡û
Identical group No.111662 (1 seq.)
>ENV09000417
ABSN01066300
Freshwater sediment metagenome lwFormaldehyde_C1
587
674
+
Leu
TAA
[ENA]
¡û
Identical group No.152645 (1 seq.)
>ENV09000093
ABSN01008065
Freshwater sediment metagenome lwFormaldehyde_C1
124
38
-
Leu
TAA
[ENA]
¡û
Identical group No.152651 (1 seq.)
>ENV09000265
ABSN01040911
Freshwater sediment metagenome lwFormaldehyde_C1
290
376
+
Leu
TAA
[ENA]
¡û
Identical group No.177701 (2 seq.)
>WENV183681985
ORMF010384471
[ORMF] groundwater metagenome; groundwater
2195
2280
+
Leu
TAA
[ENA]
¢þ
>ENV09000294
ABSN01046601
Freshwater sediment metagenome lwFormaldehyde_C1
205
290
+
Leu
TAA
[ENA]
¡û
Identical group No.217043 (1 seq.)
>ENV09000055
ABSN01002502
Freshwater sediment metagenome lwFormaldehyde_C1
723
806
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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