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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = TAG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86491 (1 seq.)
>ENV09000370
ABSN01058727
Freshwater sediment metagenome lwFormaldehyde_C1
118
33
-
Leu
TAG
[ENA]
¡û
Identical group No.150194 (2 seq.)
>WENV183681369
ORMF010297386
[ORMF] groundwater metagenome; groundwater
666
579
-
Leu
TAG
[ENA]
¢þ
>ENV09000295
ABSN01046754
Freshwater sediment metagenome lwFormaldehyde_C1
271
354
+
Leu
TAG
[ENA]
¡û
Identical group No.152644 (1 seq.)
>ENV09000078
ABSN01006449
Freshwater sediment metagenome lwFormaldehyde_C1
147
230
+
Leu
TAG
[ENA]
¡û
Identical group No.154352 (11 seq.)
>W1711392195
MENI01000021
Bacteroidota
Bacteroidetes bacterium GWA2_40_15 [MENI]
106831
106746
-
Leu
TAG
[ENA]
¡û
>W1711392472
MENP01000114
Bacteroidota
Bacteroidetes bacterium GWC2_40_22 [MENP]
58817
58732
-
Leu
TAG
[ENA]
¡û
>W1711392844
MENZ01000170
Bacteroidota
Bacteroidetes bacterium GWE2_41_25 [MENZ]
1423
1508
+
Leu
TAG
[ENA]
¡û
>W1711393357
MEON01000150
Bacteroidota
Bacteroidetes bacterium GWF2_41_9 [MEON]
67586
67501
-
Leu
TAG
[ENA]
¡û
>WENV180311899
OBJT01674066
[OBJT] soil metagenome; soil
185
102
-
Leu
TAG
[ENA]
¢þ
>WENV183702228
PDVH01027026
[PDVH] alkali sediment metagenome; glacial lake sediment
349
432
+
Leu
TAG
[ENA]
¢þ
>WENV170641399
JFJP01036981
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
64237
64152
-
Leu
TAG
[ENA]
¢þ
>WENV170642180
JFJP01039486
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4
89
+
Leu
TAG
[ENA]
¢þ
>WENV170642428
JFJP01041068
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
8946
8861
-
Leu
TAG
[ENA]
¢þ
>WENV170643390
JFJP01055082
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4
89
+
Leu
TAG
[ENA]
¢þ
>ENV09000089
ABSN01006970
Freshwater sediment metagenome lwFormaldehyde_C1
809
724
-
Leu
TAG
[ENA]
¡û
Identical group No.186005 (9 seq.)
>W1711421779
MHZV01000001
Betaproteobacteria
Rhodocyclales bacterium GWA2_65_19 [MHZV]
41153
41237
+
Leu
TAG
[ENA]
¡û
>WENV181188915
OEOE01475093
[OEOE] activated sludge metagenome; Activated Sludge
162
78
-
Leu
TAG
[ENA]
¢þ
>WENV183674989
ORJL011456252
[ORJL] groundwater metagenome; groundwater
1093
1177
+
Leu
TAG
[ENA]
¢þ
>WENV183689585
ORMF011462583
[ORMF] groundwater metagenome; groundwater
81341
81425
+
Leu
TAG
[ENA]
¢þ
>WENV170705449
LNAO01000478
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3945
3861
-
Leu
TAG
[ENA]
¢þ
>WENV170705788
LNAP01000303
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
53440
53356
-
Leu
TAG
[ENA]
¢þ
>W1910744068
MHZX01000026
Betaproteobacteria
Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 [MHZX]
12593
12509
-
Leu
TAG
[ENA]
¡û
>C151071216
CP010554
Betaproteobacteria
Rugosibacter aromaticivorans Ca6 [CP010554]
1746514
1746430
-
Leu
TAG
[Ensembl]
¡û
>ENV09000286
ABSN01044472
Freshwater sediment metagenome lwFormaldehyde_C1
547
631
+
Leu
TAG
[ENA]
¡û
Identical group No.191097 (18 seq.)
>W131164726
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
790532
790616
+
Leu
TAG
[ENA]
¡û
>W131186191
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
1953514
1953598
+
Leu
TAG
[ENA]
¡û
>W131186550
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
224212
224296
+
Leu
TAG
[ENA]
¡û
>WENV181187874
OEOE01000789
[OEOE] activated sludge metagenome; Activated Sludge
1270
1354
+
Leu
TAG
[ENA]
¢þ
>WENV181379939
OFRD01015254
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1154
1070
-
Leu
TAG
[ENA]
¢þ
>WENV181845795
OGVX01009402
[OGVX] freshwater metagenome; freshwater
252
336
+
Leu
TAG
[ENA]
¢þ
>WENV170558817
CXWL01093233
[CXWL] groundwater metagenome; biofilm material
91
7
-
Leu
TAG
[ENA]
¢þ
>WENV170961464
MLJW01000057
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
52156
52240
+
Leu
TAG
[ENA]
¢þ
>W141819362
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1921966
1922050
+
Leu
TAG
[ENA]
¡û
>W1910730019
MHBU01000001
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
50227
50143
-
Leu
TAG
[ENA]
¡û
>ENV09000137
ABSN01016812
Freshwater sediment metagenome lwFormaldehyde_C1
649
733
+
Leu
TAG
[ENA]
¡û
>ENV09000957
ABSQ01002348
Freshwater sediment metagenome lwMethenol_C1
1058
974
-
Leu
TAG
[ENA]
¡û
>ENV09001039
ABSQ01020873
Freshwater sediment metagenome lwMethenol_C1
216
132
-
Leu
TAG
[ENA]
¡û
>ENV09001125
ABSQ01036370
Freshwater sediment metagenome lwMethenol_C1
176
92
-
Leu
TAG
[ENA]
¡û
>ENV09001507
ABSR01020457
Freshwater sediment metagenome lwMethylamine_C1
581
497
-
Leu
TAG
[ENA]
¡û
>ENV09001532
ABSR01024756
Freshwater sediment metagenome lwMethylamine_C1
616
532
-
Leu
TAG
[ENA]
¡û
>ENV09001565
ABSR01030293
Freshwater sediment metagenome lwMethylamine_C1
130
46
-
Leu
TAG
[ENA]
¡û
>C10109369
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
1717214
1717130
-
Leu
TAG
[Ensembl]
¡û
Identical group No.217048 (1 seq.)
>ENV09000302
ABSN01047308
Freshwater sediment metagenome lwFormaldehyde_C1
46
130
+
Leu
TAG
[ENA]
¡û
Identical group No.217050 (1 seq.)
>ENV09000329
ABSN01053021
Freshwater sediment metagenome lwFormaldehyde_C1
537
456
-
Leu
TAG
[ENA]
¡û
Identical group No.228251 (1 seq.)
>ENV09000251
ABSN01038239
Freshwater sediment metagenome lwFormaldehyde_C1
444
364
-
Leu
TAG
[ENA]
¡û
Identical group No.228652 (9 seq.)
>W1711573268
MNCT01000099
Nitrospirota
Nitrospirae bacterium 13_2_20CM_62_7 [MNCT]
10217
10135
-
Leu
TAG
[ENA]
¡û
>W1711573593
MNDM01000018
Nitrospirota
Nitrospirae bacterium 13_2_20CM_2_62_8 [MNDM]
3733
3815
+
Leu
TAG
[ENA]
¡û
>W1711574332
MNFF01000072
Nitrospirota
Nitrospirae bacterium 13_1_40CM_4_62_6 [MNFF]
7528
7446
-
Leu
TAG
[ENA]
¡û
>W1711575064
MNHD01000332
Nitrospirota
Nitrospirae bacterium 13_1_40CM_2_62_10 [MNHD]
12540
12622
+
Leu
TAG
[ENA]
¡û
>W1711575473
MNIP01000013
Nitrospirota
Nitrospirae bacterium 13_1_20CM_4_62_6 [MNIP]
2797
2879
+
Leu
TAG
[ENA]
¡û
>W1711575973
MNJY01000023
Nitrospirota
Nitrospirae bacterium 13_1_20CM_2_62_14 [MNJY]
1543
1461
-
Leu
TAG
[ENA]
¡û
>WENV180270578
OBEQ012185448
[OBEQ] groundwater metagenome; groundwater
314
232
-
Leu
TAG
[ENA]
¢þ
>ENV09000250
ABSN01038199
Freshwater sediment metagenome lwFormaldehyde_C1
578
660
+
Leu
TAG
[ENA]
¡û
>WENV061423
AACY023431489
Marine microbial communities from Global Ocean Sampling (GOS)
738
656
-
Leu
TAG
[ENA]
Identical group No.232370 (1 seq.)
>ENV09000023
ABSN01001178
Freshwater sediment metagenome lwFormaldehyde_C1
619
540
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK