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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = TCT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255277 (4 seq.)
>WENV181361250
OFNM01000958
[OFNM] sediment metagenome; Lake sediment
276
352
+
Arg
TCT
[ENA]
¢þ
>WENV181361467
OFNX01003135
[OFNX] sediment metagenome; Lake sediment
281
205
-
Arg
TCT
[ENA]
¢þ
>WENV183702956
PDVJ01001080
[PDVJ] alkali sediment metagenome; glacial lake sediment
7201
7125
-
Arg
TCT
[ENA]
¢þ
>ENV09000337
ABSN01055041
Freshwater sediment metagenome lwFormaldehyde_C1
586
662
+
Arg
TCT
[ENA]
¡û
Identical group No.303529 (3 seq.)
>WENV170651315
JRYF01006414
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1392
1468
+
Arg
TCT
[ENA]
¢þ
>WENV170711125
LNFM01003649
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
24166
24090
-
Arg
TCT
[ENA]
¢þ
>ENV09000131
ABSN01015918
Freshwater sediment metagenome lwFormaldehyde_C1
719
643
-
Arg
TCT
[ENA]
¡û
Identical group No.326284 (9 seq.)
>W1711411308
MGSY01000547
Unclassified
Deltaproteobacteria bacterium RIFOXYB2_FULL_66_7 [MGSY]
585
661
+
Arg
TCT
[ENA]
¡û
>WENV180355634
OBNI01011397
[OBNI] sediment metagenome; sediment
146
222
+
Arg
TCT
[ENA]
¢þ
>WENV183660534
ORJL010031155
[ORJL] groundwater metagenome; groundwater
3207
3131
-
Arg
TCT
[ENA]
¢þ
>WENV183664449
ORJL010380676
[ORJL] groundwater metagenome; groundwater
547
471
-
Arg
TCT
[ENA]
¢þ
>WENV183667448
ORJL010649485
[ORJL] groundwater metagenome; groundwater
345
269
-
Arg
TCT
[ENA]
¢þ
>WENV183668229
ORJL010721593
[ORJL] groundwater metagenome; groundwater
652
576
-
Arg
TCT
[ENA]
¢þ
>WENV183676150
ORJL011592239
[ORJL] groundwater metagenome; groundwater
300
376
+
Arg
TCT
[ENA]
¢þ
>WENV183695366
ORMF012380122
[ORMF] groundwater metagenome; groundwater
250
326
+
Arg
TCT
[ENA]
¢þ
>ENV09000430
ABSN01068087
Freshwater sediment metagenome lwFormaldehyde_C1
656
580
-
Arg
TCT
[ENA]
¡û
Identical group No.427630 (2 seq.)
>WENV170554010
CXWK01042033
[CXWK] wastewater metagenome; activated sludge
201
125
-
Arg
TCT
[ENA]
¢þ
>ENV09000070
ABSN01004226
Freshwater sediment metagenome lwFormaldehyde_C1
535
611
+
Arg
TCT
[ENA]
¡û
Identical group No.447007 (1 seq.)
>ENV09000084
ABSN01006837
Freshwater sediment metagenome lwFormaldehyde_C1
202
128
-
Arg
TCT
[ENA]
¡û
Identical group No.447029 (1 seq.)
>ENV09000292
ABSN01045737
Freshwater sediment metagenome lwFormaldehyde_C1
251
177
-
Arg
TCT
[ENA]
¡û
Identical group No.447042 (1 seq.)
>ENV09000391
ABSN01063059
Freshwater sediment metagenome lwFormaldehyde_C1
512
436
-
Arg
TCT
[ENA]
¡û
Identical group No.447045 (1 seq.)
>ENV09000440
ABSN01069431
Freshwater sediment metagenome lwFormaldehyde_C1
486
560
+
Arg
TCT
[ENA]
¡û
Identical group No.648245 (1 seq.)
>ENV09000057
ABSN01002502
Freshwater sediment metagenome lwFormaldehyde_C1
902
976
+
Arg
TCT
[ENA]
¡û
Identical group No.648257 (1 seq.)
>ENV09000108
ABSN01012284
Freshwater sediment metagenome lwFormaldehyde_C1
290
215
-
Arg
TCT
[ENA]
¡û
Identical group No.648297 (1 seq.)
>ENV09000309
ABSN01049236
Freshwater sediment metagenome lwFormaldehyde_C1
109
182
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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