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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = TGC
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.494111 (3 seq.)
>WENV180690279
OCZS010001759
[OCZS] soil metagenome; soil
6764
6836
+
Ala
TGC
[ENA]
¢þ
>WENV181184722
OEKP01000199
[OEKP] metagenome; 1998
1357
1285
-
Ala
TGC
[ENA]
¢þ
>ENV09000308
ABSN01049180
Freshwater sediment metagenome lwFormaldehyde_C1
231
303
+
Ala
TGC
[ENA]
¡û
Identical group No.540789 (2 seq.)
>WENV170888499
MDTC01258851
[MDTC] marine metagenome; seawater
2778
2705
-
Ala
TGC
[ENA]
¢þ
>ENV09000374
ABSN01059052
Freshwater sediment metagenome lwFormaldehyde_C1
277
205
-
Ala
TGC
[ENA]
¡û
Identical group No.609512 (2 seq.)
>WENV183670877
ORJL010998165
[ORJL] groundwater metagenome; groundwater
440
513
+
Ala
TGC
[ENA]
¢þ
>ENV09000424
ABSN01066666
Freshwater sediment metagenome lwFormaldehyde_C1
723
795
+
Ala
TGC
[ENA]
¡û
Identical group No.648237 (1 seq.)
>ENV09000012
ABSN01000473
Freshwater sediment metagenome lwFormaldehyde_C1
2345
2418
+
Ala
TGC
[ENA]
¡û
Identical group No.648241 (1 seq.)
>ENV09000044
ABSN01001990
Freshwater sediment metagenome lwFormaldehyde_C1
1871
1946
+
Ala
TGC
[ENA]
¡û
Identical group No.648246 (1 seq.)
>ENV09000061
ABSN01002958
Freshwater sediment metagenome lwFormaldehyde_C1
394
469
+
Ala
TGC
[ENA]
¡û
Identical group No.648267 (1 seq.)
>ENV09000154
ABSN01019547
Freshwater sediment metagenome lwFormaldehyde_C1
303
230
-
Ala
TGC
[ENA]
¡û
Identical group No.648283 (1 seq.)
>ENV09000216
ABSN01031828
Freshwater sediment metagenome lwFormaldehyde_C1
550
478
-
Ala
TGC
[ENA]
¡û
Identical group No.648285 (1 seq.)
>ENV09000232
ABSN01035514
Freshwater sediment metagenome lwFormaldehyde_C1
401
473
+
Ala
TGC
[ENA]
¡û
Identical group No.648313 (1 seq.)
>ENV09000429
ABSN01067651
Freshwater sediment metagenome lwFormaldehyde_C1
531
606
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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