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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = TGG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.269643 (1 seq.)
>ENV09000307
ABSN01048772
Freshwater sediment metagenome lwFormaldehyde_C1
507
582
+
Pro
TGG
[ENA]
¡û
Identical group No.447008 (1 seq.)
>ENV09000088
ABSN01006929
Freshwater sediment metagenome lwFormaldehyde_C1
384
460
+
Pro
TGG
[ENA]
¡û
Identical group No.447009 (1 seq.)
>ENV09000094
ABSN01008147
Freshwater sediment metagenome lwFormaldehyde_C1
299
375
+
Pro
TGG
[ENA]
¡û
Identical group No.447012 (1 seq.)
>ENV09000130
ABSN01015918
Freshwater sediment metagenome lwFormaldehyde_C1
815
739
-
Pro
TGG
[ENA]
¡û
Identical group No.447041 (1 seq.)
>ENV09000390
ABSN01063059
Freshwater sediment metagenome lwFormaldehyde_C1
634
558
-
Pro
TGG
[ENA]
¡û
Identical group No.447047 (1 seq.)
>ENV09000442
ABSN01069537
Freshwater sediment metagenome lwFormaldehyde_C1
269
193
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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