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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormate_C1
Anticodon = CCC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.698458 (5 seq.)
>WENV180099116
MTBK01289238
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
458
532
+
Gly
CCC
[ENA]
¢þ
>WENV183702923
PDVJ01000851
[PDVJ] alkali sediment metagenome; glacial lake sediment
7433
7359
-
Gly
CCC
[ENA]
¢þ
>WENV170972856
MTKY01003211
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2724
2650
-
Gly
CCC
[ENA]
¢þ
>WENV170975055
MTKY01089283
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1101
1027
-
Gly
CCC
[ENA]
¢þ
>ENV09000510
ABSO01009984
Freshwater sediment metagenome lwFormate_C1
140
66
-
Gly
CCC
[ENA]
¡û
Identical group No.816403 (4 seq.)
>ENV09000502
ABSO01006695
Freshwater sediment metagenome lwFormate_C1
219
290
+
Gly
CCC
[ENA]
¡û
>ENV09000544
ABSO01016447
Freshwater sediment metagenome lwFormate_C1
305
376
+
Gly
CCC
[ENA]
¡û
>ENV09000730
ABSP01024613
Freshwater sediment metagenome lwMethane_C1
129
58
-
Gly
CCC
[ENA]
¡û
>ENV09001001
ABSQ01014013
Freshwater sediment metagenome lwMethenol_C1
284
213
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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