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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormate_C1
Anticodon = GAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457151 (54 seq.)
>WENV180247806
OBEQ010058394
[OBEQ] groundwater metagenome; groundwater
1209
1284
+
Phe
GAA
[ENA]
¢þ
>WENV180291441
OBIV01059703
[OBIV] soil metagenome; Clay
180
255
+
Phe
GAA
[ENA]
¢þ
>WENV180295223
OBIZ01039686
[OBIZ] soil metagenome; soil
736
661
-
Phe
GAA
[ENA]
¢þ
>WENV180327275
OBKT01030452
[OBKT] soil metagenome; soil
58
133
+
Phe
GAA
[ENA]
¢þ
>WENV180343056
OBLJ01263993
[OBLJ] soil metagenome; Clay
252
177
-
Phe
GAA
[ENA]
¢þ
>WENV180343329
OBLK01003979
[OBLK] soil metagenome; Clay
338
413
+
Phe
GAA
[ENA]
¢þ
>WENV180351204
OBLQ010032810
[OBLQ] soil metagenome; soil
959
884
-
Phe
GAA
[ENA]
¢þ
>WENV180352470
OBLQ010262900
[OBLQ] soil metagenome; soil
524
599
+
Phe
GAA
[ENA]
¢þ
>WENV180690604
OCZS010013942
[OCZS] soil metagenome; soil
2397
2322
-
Phe
GAA
[ENA]
¢þ
>WENV181162602
OEIO01001938
[OEIO] marine metagenome; sea ice
371
446
+
Phe
GAA
[ENA]
¢þ
>WENV181296327
OFHJ01026118
[OFHJ] soil metagenome; Clay
346
271
-
Phe
GAA
[ENA]
¢þ
>WENV181304867
OFID01003823
[OFID] marine metagenome; sea ice
214
139
-
Phe
GAA
[ENA]
¢þ
>WENV181309916
OFIY01006892
[OFIY] marine metagenome; sea ice
407
482
+
Phe
GAA
[ENA]
¢þ
>WENV181316076
OFJS01004823
[OFJS] marine metagenome; sea ice
289
214
-
Phe
GAA
[ENA]
¢þ
>WENV181416761
OGCL01141280
[OGCL] hot springs metagenome; Hot spring water
201
276
+
Phe
GAA
[ENA]
¢þ
>W141186995
AYLE01000031
Deinococcota
Deinococcus-Thermus bacterium JGI 0000112-G17 [AYLE]
2613
2538
-
Phe
GAA
[ENA]
¡û
>W141186996
AYLE01000039
Deinococcota
Deinococcus-Thermus bacterium JGI 0000112-G17 [AYLE]
1575
1650
+
Phe
GAA
[ENA]
¡û
>W141186997
AYLE01000067
Deinococcota
Deinococcus-Thermus bacterium JGI 0000112-G17 [AYLE]
408
333
-
Phe
GAA
[ENA]
¡û
>WENV183627404
OOGL01002966
[OOGL] marine metagenome; sea ice
1764
1839
+
Phe
GAA
[ENA]
¢þ
>WENV183631017
OOGU01017670
[OOGU] marine metagenome; sea ice
2
77
+
Phe
GAA
[ENA]
¢þ
>WENV183666664
ORJL010573583
[ORJL] groundwater metagenome; groundwater
457
532
+
Phe
GAA
[ENA]
¢þ
>WENV183680181
ORMF010148286
[ORMF] groundwater metagenome; groundwater
3
78
+
Phe
GAA
[ENA]
¢þ
>WENV183683077
ORMF010526202
[ORMF] groundwater metagenome; groundwater
47257
47182
-
Phe
GAA
[ENA]
¢þ
>WENV183684215
ORMF010677443
[ORMF] groundwater metagenome; groundwater
229
304
+
Phe
GAA
[ENA]
¢þ
>WENV183686398
ORMF010994415
[ORMF] groundwater metagenome; groundwater
273
198
-
Phe
GAA
[ENA]
¢þ
>WENV183688773
ORMF011340768
[ORMF] groundwater metagenome; groundwater
342
417
+
Phe
GAA
[ENA]
¢þ
>WENV183693672
ORMF012118447
[ORMF] groundwater metagenome; groundwater
431
356
-
Phe
GAA
[ENA]
¢þ
>WENV183724942
PJQE01105079
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
134
209
+
Phe
GAA
[ENA]
¢þ
>WENV170203678
CEPS01078567
[CEPS] marine metagenome genome assembly TARA_038_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
73
1
-
Phe
GAA
[ENA]
¢þ
>WENV170210193
CEPV01150329
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
523
598
+
Phe
GAA
[ENA]
¢þ
>WENV170551993
CXWJ01033641
[CXWJ] wastewater metagenome; activated sludge
342
417
+
Phe
GAA
[ENA]
¢þ
>WENV170648707
JRHI01001525
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
18506
18581
+
Phe
GAA
[ENA]
¢þ
>WENV170649598
JRYC01031614
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
674
749
+
Phe
GAA
[ENA]
¢þ
>WENV170711102
LNFM01003549
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
331
256
-
Phe
GAA
[ENA]
¢þ
>WENV170771069
LXNI01000355
[LXNI] sponge metagenome; marine sponge reef
33977
34052
+
Phe
GAA
[ENA]
¢þ
>WENV170773120
LXNJ01002188
[LXNJ] sponge metagenome; marine sponge reef
1465
1390
-
Phe
GAA
[ENA]
¢þ
>WENV170959023
MKWU01002722
[MKWU] sponge metagenome;
9551
9476
-
Phe
GAA
[ENA]
¢þ
>WENV170964447
MRWG01012393
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1886
1961
+
Phe
GAA
[ENA]
¢þ
>C191005677
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
2543510
2543585
+
Phe
GAA
-
¡û
>W1910545508
FZLR01000008
Alphaproteobacteria
Rhodospirillaceae bacterium Spongia-Bin9 [FZLR]
6206
6131
-
Phe
GAA
[ENA]
¡û
>W1911148349
NPEU01000007
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
1833
1908
+
Phe
GAA
[ENA]
¡û
>W1911148473
NPEW01000229
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
203
278
+
Phe
GAA
[ENA]
¡û
>W1911148520
NPEX01000216
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
517
442
-
Phe
GAA
[ENA]
¡û
>W1911708746
QOZR01000011
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60014 [QOZR]
135834
135909
+
Phe
GAA
[ENA]
¡û
>W1810700550
QMDI01000002
Alphaproteobacteria
Elioraea thermophila YIM 72297 [QMDI]
224536
224611
+
Phe
GAA
[ENA]
¡û
>SRA1013143
SRR020514.42354
Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048)
46
121
+
Phe
GAA
[SRA]
>ENV09000539
ABSO01015342
Freshwater sediment metagenome lwFormate_C1
503
578
+
Phe
GAA
[ENA]
¡û
>C161001662
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
2886504
2886429
-
Phe
GAA
[Ensembl]
¡û
>C161048012
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
2134686
2134761
+
Phe
GAA
-
¡û
>C161108079
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
1534657
1534732
+
Phe
GAA
[Ensembl]
¡û
>W121103219
AKZI01000068
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
34846
34771
-
Phe
GAA
[ENA]
¡û
>W1710527748
FNLG01000001
Alphaproteobacteria
Rhizobiales bacterium GAS113 [FNLG]
2623029
2623104
+
Phe
GAA
[ENA]
¡û
>W1710535712
FNSS01000001
Alphaproteobacteria
Rhizobiales bacterium GAS188 [FNSS]
96922
96847
-
Phe
GAA
[ENA]
¡û
>W1710535978
FNSX01000001
Alphaproteobacteria
Rhizobiales bacterium GAS191 [FNSX]
3586504
3586579
+
Phe
GAA
[ENA]
¡û
Identical group No.586953 (1 seq.)
>ENV09000492
ABSO01005114
Freshwater sediment metagenome lwFormate_C1
408
333
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK