tRNA genes clustered and arranged according to each identical group

Freshwater sediment metagenome lwFormate_C1

Anticodon = GAA

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.457151 (54 seq.)
>WENV180247806 OBEQ010058394 [OBEQ] groundwater metagenome; groundwater 1209 1284 + Phe GAA [ENA] ¢þ
>WENV180291441 OBIV01059703 [OBIV] soil metagenome; Clay 180 255 + Phe GAA [ENA] ¢þ
>WENV180295223 OBIZ01039686 [OBIZ] soil metagenome; soil 736 661 - Phe GAA [ENA] ¢þ
>WENV180327275 OBKT01030452 [OBKT] soil metagenome; soil 58 133 + Phe GAA [ENA] ¢þ
>WENV180343056 OBLJ01263993 [OBLJ] soil metagenome; Clay 252 177 - Phe GAA [ENA] ¢þ
>WENV180343329 OBLK01003979 [OBLK] soil metagenome; Clay 338 413 + Phe GAA [ENA] ¢þ
>WENV180351204 OBLQ010032810 [OBLQ] soil metagenome; soil 959 884 - Phe GAA [ENA] ¢þ
>WENV180352470 OBLQ010262900 [OBLQ] soil metagenome; soil 524 599 + Phe GAA [ENA] ¢þ
>WENV180690604 OCZS010013942 [OCZS] soil metagenome; soil 2397 2322 - Phe GAA [ENA] ¢þ
>WENV181162602 OEIO01001938 [OEIO] marine metagenome; sea ice 371 446 + Phe GAA [ENA] ¢þ
>WENV181296327 OFHJ01026118 [OFHJ] soil metagenome; Clay 346 271 - Phe GAA [ENA] ¢þ
>WENV181304867 OFID01003823 [OFID] marine metagenome; sea ice 214 139 - Phe GAA [ENA] ¢þ
>WENV181309916 OFIY01006892 [OFIY] marine metagenome; sea ice 407 482 + Phe GAA [ENA] ¢þ
>WENV181316076 OFJS01004823 [OFJS] marine metagenome; sea ice 289 214 - Phe GAA [ENA] ¢þ
>WENV181416761 OGCL01141280 [OGCL] hot springs metagenome; Hot spring water 201 276 + Phe GAA [ENA] ¢þ
>W141186995 AYLE01000031 Deinococcota Deinococcus-Thermus bacterium JGI 0000112-G17 [AYLE] 2613 2538 - Phe GAA [ENA] ¡û
>W141186996 AYLE01000039 Deinococcota Deinococcus-Thermus bacterium JGI 0000112-G17 [AYLE] 1575 1650 + Phe GAA [ENA] ¡û
>W141186997 AYLE01000067 Deinococcota Deinococcus-Thermus bacterium JGI 0000112-G17 [AYLE] 408 333 - Phe GAA [ENA] ¡û
>WENV183627404 OOGL01002966 [OOGL] marine metagenome; sea ice 1764 1839 + Phe GAA [ENA] ¢þ
>WENV183631017 OOGU01017670 [OOGU] marine metagenome; sea ice 2 77 + Phe GAA [ENA] ¢þ
>WENV183666664 ORJL010573583 [ORJL] groundwater metagenome; groundwater 457 532 + Phe GAA [ENA] ¢þ
>WENV183680181 ORMF010148286 [ORMF] groundwater metagenome; groundwater 3 78 + Phe GAA [ENA] ¢þ
>WENV183683077 ORMF010526202 [ORMF] groundwater metagenome; groundwater 47257 47182 - Phe GAA [ENA] ¢þ
>WENV183684215 ORMF010677443 [ORMF] groundwater metagenome; groundwater 229 304 + Phe GAA [ENA] ¢þ
>WENV183686398 ORMF010994415 [ORMF] groundwater metagenome; groundwater 273 198 - Phe GAA [ENA] ¢þ
>WENV183688773 ORMF011340768 [ORMF] groundwater metagenome; groundwater 342 417 + Phe GAA [ENA] ¢þ
>WENV183693672 ORMF012118447 [ORMF] groundwater metagenome; groundwater 431 356 - Phe GAA [ENA] ¢þ
>WENV183724942 PJQE01105079 [PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane 134 209 + Phe GAA [ENA] ¢þ
>WENV170203678 CEPS01078567 [CEPS] marine metagenome genome assembly TARA_038_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 73 1 - Phe GAA [ENA] ¢þ
>WENV170210193 CEPV01150329 [CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 523 598 + Phe GAA [ENA] ¢þ
>WENV170551993 CXWJ01033641 [CXWJ] wastewater metagenome; activated sludge 342 417 + Phe GAA [ENA] ¢þ
>WENV170648707 JRHI01001525 [JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced 18506 18581 + Phe GAA [ENA] ¢þ
>WENV170649598 JRYC01031614 [JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater 674 749 + Phe GAA [ENA] ¢þ
>WENV170711102 LNFM01003549 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 331 256 - Phe GAA [ENA] ¢þ
>WENV170771069 LXNI01000355 [LXNI] sponge metagenome; marine sponge reef 33977 34052 + Phe GAA [ENA] ¢þ
>WENV170773120 LXNJ01002188 [LXNJ] sponge metagenome; marine sponge reef 1465 1390 - Phe GAA [ENA] ¢þ
>WENV170959023 MKWU01002722 [MKWU] sponge metagenome; 9551 9476 - Phe GAA [ENA] ¢þ
>WENV170964447 MRWG01012393 [MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell 1886 1961 + Phe GAA [ENA] ¢þ
>C191005677 AP018907 Alphaproteobacteria Blastochloris tepida GI [AP018907] 2543510 2543585 + Phe GAA - ¡û
>W1910545508 FZLR01000008 Alphaproteobacteria Rhodospirillaceae bacterium Spongia-Bin9 [FZLR] 6206 6131 - Phe GAA [ENA] ¡û
>W1911148349 NPEU01000007 Alphaproteobacteria Rhodoplanes elegans DSM 11907 [NPEU] 1833 1908 + Phe GAA [ENA] ¡û
>W1911148473 NPEW01000229 Alphaproteobacteria Rhodoplanes serenus DSM 19946 [NPEW] 203 278 + Phe GAA [ENA] ¡û
>W1911148520 NPEX01000216 Alphaproteobacteria Rhodoplanes roseus DSM 5909 [NPEX] 517 442 - Phe GAA [ENA] ¡û
>W1911708746 QOZR01000011 Alphaproteobacteria Rhodospirillaceae bacterium SYSU D60014 [QOZR] 135834 135909 + Phe GAA [ENA] ¡û
>W1810700550 QMDI01000002 Alphaproteobacteria Elioraea thermophila YIM 72297 [QMDI] 224536 224611 + Phe GAA [ENA] ¡û
>SRA1013143 SRR020514.42354 Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048) 46 121 + Phe GAA [SRA]
>ENV09000539 ABSO01015342 Freshwater sediment metagenome lwFormate_C1 503 578 + Phe GAA [ENA] ¡û
>C161001662 AP014854 Alphaproteobacteria Blastochloris viridis DSM 133 [AP014854] 2886504 2886429 - Phe GAA [Ensembl] ¡û
>C161048012 CP012946 Alphaproteobacteria Blastochloris viridis ATCC 19567 [CP012946] 2134686 2134761 + Phe GAA - ¡û
>C161108079 LN907867 Alphaproteobacteria Blastochloris viridis [LN907867] 1534657 1534732 + Phe GAA [Ensembl] ¡û
>W121103219 AKZI01000068 Alphaproteobacteria Rhodovulum sp. PH10 [AKZI] 34846 34771 - Phe GAA [ENA] ¡û
>W1710527748 FNLG01000001 Alphaproteobacteria Rhizobiales bacterium GAS113 [FNLG] 2623029 2623104 + Phe GAA [ENA] ¡û
>W1710535712 FNSS01000001 Alphaproteobacteria Rhizobiales bacterium GAS188 [FNSS] 96922 96847 - Phe GAA [ENA] ¡û
>W1710535978 FNSX01000001 Alphaproteobacteria Rhizobiales bacterium GAS191 [FNSX] 3586504 3586579 + Phe GAA [ENA] ¡û
Identical group No.586953 (1 seq.)
>ENV09000492 ABSO01005114 Freshwater sediment metagenome lwFormate_C1 408 333 - Phe GAA [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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