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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormate_C1
Anticodon = GCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10830 (1 seq.)
>ENV09000511
ABSO01010268
Freshwater sediment metagenome lwFormate_C1
150
60
-
Ser
GCT
[ENA]
¡û
Identical group No.12447 (44 seq.)
>W1710807299
LKCX01000011
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
27882
27974
+
Ser
GCT
[ENA]
¡û
>W1711409694
MGPB01000021
Betaproteobacteria
Curvibacter sp. GWA2_63_95 [MGPB]
96436
96528
+
Ser
GCT
[ENA]
¡û
>W1711409738
MGPC01000029
Betaproteobacteria
Curvibacter sp. GWA2_64_110 [MGPC]
106326
106234
-
Ser
GCT
[ENA]
¡û
>W1711503058
MKTG01000097
Betaproteobacteria
Burkholderiales bacterium 68-10 [MKTG]
571
479
-
Ser
GCT
[ENA]
¡û
>W1711504297
MKUK01000034
Betaproteobacteria
Alicycliphilus sp. 69-12 [MKUK]
207596
207504
-
Ser
GCT
[ENA]
¡û
>W1711504599
MKUS01000032
Betaproteobacteria
Burkholderiales bacterium 68-12 [MKUS]
94380
94472
+
Ser
GCT
[ENA]
¡û
>W1711680547
MRWK01000752
Betaproteobacteria
Comamonadaceae bacterium BIN2 [MRWK]
1351
1259
-
Ser
GCT
[ENA]
¡û
>C171091702
CP019239
Betaproteobacteria
Rhodoferax saidenbachensis DSM 22694 [CP019239]
2550539
2550447
-
Ser
GCT
-
¡û
>WENV180731750
ODGW01010100
[ODGW] human metagenome; G_DNA_Supragingival plaque
122
30
-
Ser
GCT
[ENA]
¢þ
>WENV180835337
ODKE01002198
[ODKE] human metagenome; G_DNA_Supragingival plaque
1659
1751
+
Ser
GCT
[ENA]
¢þ
>WENV180938874
ODTX01008779
[ODTX] human metagenome; G_DNA_Supragingival plaque
1324
1232
-
Ser
GCT
[ENA]
¢þ
>WENV180982149
ODVE01170452
[ODVE] human metagenome; G_DNA_Supragingival plaque
307
215
-
Ser
GCT
[ENA]
¢þ
>WENV180983698
ODVF01029863
[ODVF] human metagenome; G_DNA_Supragingival plaque
131
39
-
Ser
GCT
[ENA]
¢þ
>WENV180987651
ODVK01063761
[ODVK] human metagenome; G_DNA_Supragingival plaque
180
272
+
Ser
GCT
[ENA]
¢þ
>WENV181049667
ODYD01001214
[ODYD] human metagenome; G_DNA_Supragingival plaque
6078
5986
-
Ser
GCT
[ENA]
¢þ
>WENV181070262
OEAE01000548
[OEAE] human metagenome; G_DNA_Supragingival plaque
7456
7548
+
Ser
GCT
[ENA]
¢þ
>WENV181108127
OEEI01094487
[OEEI] human metagenome; G_DNA_Supragingival plaque
202
110
-
Ser
GCT
[ENA]
¢þ
>WENV181167149
OEIU01010468
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1281
1373
+
Ser
GCT
[ENA]
¢þ
>WENV181227638
OFDN01024825
[OFDN] hot springs metagenome; Water
1056
964
-
Ser
GCT
[ENA]
¢þ
>WENV181307899
OFIS01000023
[OFIS] sludge metagenome; sludge
144885
144793
-
Ser
GCT
[ENA]
¢þ
>WENV181401515
OFTX01000540
[OFTX] sludge metagenome; sludge
2032
1940
-
Ser
GCT
[ENA]
¢þ
>W141142463
AWQR01000050
Betaproteobacteria
Rhodoferax saidenbachensis ED16 [AWQR]
6185
6093
-
Ser
GCT
[ENA]
¡û
>W141238157
BBJX01000017
Betaproteobacteria
Comamonas granuli NBRC 101663 [BBJX]
8741
8833
+
Ser
GCT
[ENA]
¡û
>WENV170389492
CEUA01018938
[CEUA] marine metagenome genome assembly TARA_132_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
778
686
-
Ser
GCT
[ENA]
¢þ
>WENV170688173
LFRM01231875
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
486
394
-
Ser
GCT
[ENA]
¢þ
>C181158505
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
405506
405414
-
Ser
GCT
-
¡û
>W141816807
JQKD01000029
Betaproteobacteria
Xenophilus azovorans DSM 13620 [JQKD]
64122
64214
+
Ser
GCT
[ENA]
¡û
>W1910726044
MGPD01000042
Betaproteobacteria
Curvibacter sp. RIFCSPHIGHO2_12_FULL_63_18 [MGPD]
43613
43705
+
Ser
GCT
[ENA]
¡û
>W1910972085
NKDB02000001
Betaproteobacteria
Alicycliphilus denitrificans BQ1 [NKDB]
1587760
1587852
+
Ser
GCT
[ENA]
¡û
>W1911139400
NOXW01000020
Betaproteobacteria
Rhodoferax sp. TH121 [NOXW]
588452
588544
+
Ser
GCT
[ENA]
¡û
>W1911502755
OEQA01000001
Betaproteobacteria
Ottowia massiliensis Marseille-P4747 [OEQA]
173980
174072
+
Ser
GCT
[ENA]
¡û
>W1810088980
PGEJ01000009
Betaproteobacteria
Alicycliphilus denitrificans CD02 [PGEJ]
134292
134384
+
Ser
GCT
[ENA]
¡û
>W1810305900
PTQY01000001
Betaproteobacteria
Rhodoferax sp. TS-BS-61-7 [PTQY]
250154
250062
-
Ser
GCT
[ENA]
¡û
>W1810609646
QGUB01000007
Betaproteobacteria
Melaminivora alkalimesophila DSM 26006 [QGUB]
119903
119995
+
Ser
GCT
[ENA]
¡û
>C151090615
CP012073
Betaproteobacteria
Ottowia sp. oral taxon 894 W10237 [CP012073]
2486506
2486414
-
Ser
GCT
-
¡û
>ENV09000486
ABSO01004090
Freshwater sediment metagenome lwFormate_C1
128
220
+
Ser
GCT
[ENA]
¡û
>W1510016555
BBSJ01000033
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
5253
5345
+
Ser
GCT
[ENA]
¡û
>W1510016576
BBSJ01000051
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
1071390
1071298
-
Ser
GCT
[ENA]
¡û
>W10119632
ADWA01000092
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
7812
7904
+
Ser
GCT
[ENA]
¡û
>C11100585
CP002449
Betaproteobacteria
Alicycliphilus denitrificans BC [CP002449]
2172481
2172573
+
Ser
GCT
[Ensembl]
¡û
>C11100633
CP002657
Betaproteobacteria
Alicycliphilus denitrificans K601 [CP002657]
2416746
2416838
+
Ser
GCT
[Ensembl]
¡û
>W11125898
ADWA01000092
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
7812
7904
+
Ser
GCT
[ENA]
¡û
>W121108924
ALEE01000590
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
527
435
-
Ser
GCT
[ENA]
¡û
>W1610671403
LKCX01000011
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
27882
27974
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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