tRNA genes clustered and arranged according to each identical group

Freshwater sediment metagenome lwFormate_C1

Anticodon = GCT

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.10830 (1 seq.)
>ENV09000511 ABSO01010268 Freshwater sediment metagenome lwFormate_C1 150 60 - Ser GCT [ENA] ¡û
Identical group No.12447 (44 seq.)
>W1710807299 LKCX01000011 Betaproteobacteria Curvibacter sp. PAE-UM [LKCX] 27882 27974 + Ser GCT [ENA] ¡û
>W1711409694 MGPB01000021 Betaproteobacteria Curvibacter sp. GWA2_63_95 [MGPB] 96436 96528 + Ser GCT [ENA] ¡û
>W1711409738 MGPC01000029 Betaproteobacteria Curvibacter sp. GWA2_64_110 [MGPC] 106326 106234 - Ser GCT [ENA] ¡û
>W1711503058 MKTG01000097 Betaproteobacteria Burkholderiales bacterium 68-10 [MKTG] 571 479 - Ser GCT [ENA] ¡û
>W1711504297 MKUK01000034 Betaproteobacteria Alicycliphilus sp. 69-12 [MKUK] 207596 207504 - Ser GCT [ENA] ¡û
>W1711504599 MKUS01000032 Betaproteobacteria Burkholderiales bacterium 68-12 [MKUS] 94380 94472 + Ser GCT [ENA] ¡û
>W1711680547 MRWK01000752 Betaproteobacteria Comamonadaceae bacterium BIN2 [MRWK] 1351 1259 - Ser GCT [ENA] ¡û
>C171091702 CP019239 Betaproteobacteria Rhodoferax saidenbachensis DSM 22694 [CP019239] 2550539 2550447 - Ser GCT - ¡û
>WENV180731750 ODGW01010100 [ODGW] human metagenome; G_DNA_Supragingival plaque 122 30 - Ser GCT [ENA] ¢þ
>WENV180835337 ODKE01002198 [ODKE] human metagenome; G_DNA_Supragingival plaque 1659 1751 + Ser GCT [ENA] ¢þ
>WENV180938874 ODTX01008779 [ODTX] human metagenome; G_DNA_Supragingival plaque 1324 1232 - Ser GCT [ENA] ¢þ
>WENV180982149 ODVE01170452 [ODVE] human metagenome; G_DNA_Supragingival plaque 307 215 - Ser GCT [ENA] ¢þ
>WENV180983698 ODVF01029863 [ODVF] human metagenome; G_DNA_Supragingival plaque 131 39 - Ser GCT [ENA] ¢þ
>WENV180987651 ODVK01063761 [ODVK] human metagenome; G_DNA_Supragingival plaque 180 272 + Ser GCT [ENA] ¢þ
>WENV181049667 ODYD01001214 [ODYD] human metagenome; G_DNA_Supragingival plaque 6078 5986 - Ser GCT [ENA] ¢þ
>WENV181070262 OEAE01000548 [OEAE] human metagenome; G_DNA_Supragingival plaque 7456 7548 + Ser GCT [ENA] ¢þ
>WENV181108127 OEEI01094487 [OEEI] human metagenome; G_DNA_Supragingival plaque 202 110 - Ser GCT [ENA] ¢þ
>WENV181167149 OEIU01010468 [OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex 1281 1373 + Ser GCT [ENA] ¢þ
>WENV181227638 OFDN01024825 [OFDN] hot springs metagenome; Water 1056 964 - Ser GCT [ENA] ¢þ
>WENV181307899 OFIS01000023 [OFIS] sludge metagenome; sludge 144885 144793 - Ser GCT [ENA] ¢þ
>WENV181401515 OFTX01000540 [OFTX] sludge metagenome; sludge 2032 1940 - Ser GCT [ENA] ¢þ
>W141142463 AWQR01000050 Betaproteobacteria Rhodoferax saidenbachensis ED16 [AWQR] 6185 6093 - Ser GCT [ENA] ¡û
>W141238157 BBJX01000017 Betaproteobacteria Comamonas granuli NBRC 101663 [BBJX] 8741 8833 + Ser GCT [ENA] ¡û
>WENV170389492 CEUA01018938 [CEUA] marine metagenome genome assembly TARA_132_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 778 686 - Ser GCT [ENA] ¢þ
>WENV170688173 LFRM01231875 [LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle 486 394 - Ser GCT [ENA] ¢þ
>C181158505 CP027667 Betaproteobacteria Melaminivora suipulveris SC2-9 [CP027667] 405506 405414 - Ser GCT - ¡û
>W141816807 JQKD01000029 Betaproteobacteria Xenophilus azovorans DSM 13620 [JQKD] 64122 64214 + Ser GCT [ENA] ¡û
>W1910726044 MGPD01000042 Betaproteobacteria Curvibacter sp. RIFCSPHIGHO2_12_FULL_63_18 [MGPD] 43613 43705 + Ser GCT [ENA] ¡û
>W1910972085 NKDB02000001 Betaproteobacteria Alicycliphilus denitrificans BQ1 [NKDB] 1587760 1587852 + Ser GCT [ENA] ¡û
>W1911139400 NOXW01000020 Betaproteobacteria Rhodoferax sp. TH121 [NOXW] 588452 588544 + Ser GCT [ENA] ¡û
>W1911502755 OEQA01000001 Betaproteobacteria Ottowia massiliensis Marseille-P4747 [OEQA] 173980 174072 + Ser GCT [ENA] ¡û
>W1810088980 PGEJ01000009 Betaproteobacteria Alicycliphilus denitrificans CD02 [PGEJ] 134292 134384 + Ser GCT [ENA] ¡û
>W1810305900 PTQY01000001 Betaproteobacteria Rhodoferax sp. TS-BS-61-7 [PTQY] 250154 250062 - Ser GCT [ENA] ¡û
>W1810609646 QGUB01000007 Betaproteobacteria Melaminivora alkalimesophila DSM 26006 [QGUB] 119903 119995 + Ser GCT [ENA] ¡û
>C151090615 CP012073 Betaproteobacteria Ottowia sp. oral taxon 894 W10237 [CP012073] 2486506 2486414 - Ser GCT - ¡û
>ENV09000486 ABSO01004090 Freshwater sediment metagenome lwFormate_C1 128 220 + Ser GCT [ENA] ¡û
>W1510016555 BBSJ01000033 Betaproteobacteria Alicycliphilus sp. B1 [BBSJ] 5253 5345 + Ser GCT [ENA] ¡û
>W1510016576 BBSJ01000051 Betaproteobacteria Alicycliphilus sp. B1 [BBSJ] 1071390 1071298 - Ser GCT [ENA] ¡û
>W10119632 ADWA01000092 Betaproteobacteria Alicycliphilus denitrificans BC [ADWA] 7812 7904 + Ser GCT [ENA] ¡û
>C11100585 CP002449 Betaproteobacteria Alicycliphilus denitrificans BC [CP002449] 2172481 2172573 + Ser GCT [Ensembl] ¡û
>C11100633 CP002657 Betaproteobacteria Alicycliphilus denitrificans K601 [CP002657] 2416746 2416838 + Ser GCT [Ensembl] ¡û
>W11125898 ADWA01000092 Betaproteobacteria Alicycliphilus denitrificans BC [ADWA] 7812 7904 + Ser GCT [ENA] ¡û
>W121108924 ALEE01000590 Betaproteobacteria Melaminivora alkalimesophila CRZ1 [ALEE] 527 435 - Ser GCT [ENA] ¡û
>W1610671403 LKCX01000011 Betaproteobacteria Curvibacter sp. PAE-UM [LKCX] 27882 27974 + Ser GCT [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK