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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormate_C1
Anticodon = GGG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245868 (12 seq.)
>WENV180022487
FTGH01000079
[FTGH] metagenome; soil
1280
1354
+
Pro
GGG
[ENA]
¢þ
>WENV180292936
OBIV01719451
[OBIV] soil metagenome; Clay
224
147
-
Pro
GGG
[ENA]
¢þ
>WENV180355124
OBNG01010658
[OBNG] sediment metagenome; sediment
259
184
-
Pro
GGG
[ENA]
¢þ
>WENV180355371
OBNH01006345
[OBNH] sediment metagenome; sediment
309
235
-
Pro
GGG
[ENA]
¢þ
>WENV180690365
OCZS010004006
[OCZS] soil metagenome; soil
1031
956
-
Pro
GGG
[ENA]
¢þ
>WENV181184746
OEKP01000762
[OEKP] metagenome; 1998
1924
1850
-
Pro
GGG
[ENA]
¢þ
>WENV181185832
OEMB01000530
[OEMB] metagenome; 1998
2778
2703
-
Pro
GGG
[ENA]
¢þ
>WENV183668520
ORJL010748812
[ORJL] groundwater metagenome; groundwater
1480
1555
+
Pro
GGG
[ENA]
¢þ
>WENV183675855
ORJL011558985
[ORJL] groundwater metagenome; groundwater
1813
1739
-
Pro
GGG
[ENA]
¢þ
>W1810784106
QQZY01000002
Actinomycetota
Gaiella occulta F2-233 [QQZY]
256177
256103
-
Pro
GGG
[ENA]
¡û
>ENV09000477
ABSO01003035
Freshwater sediment metagenome lwFormate_C1
522
447
-
Pro
GGG
[ENA]
¡û
>ENV09001166
ABSQ01042559
Freshwater sediment metagenome lwMethenol_C1
525
450
-
Pro
GGG
[ENA]
¡û
Identical group No.287535 (5 seq.)
>WENV181166707
OEIU01001229
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
9996
9923
-
Pro
GGG
[ENA]
¢þ
>WENV181376655
OFQZ01085002
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
388
462
+
Pro
GGG
[ENA]
¢þ
>WENV183627852
OOGL01061333
[OOGL] marine metagenome; sea ice
481
407
-
Pro
GGG
[ENA]
¢þ
>WENV170577161
FRDC01003713
[FRDC] freshwater metagenome; water
37980
37907
-
Pro
GGG
[ENA]
¢þ
>ENV09000500
ABSO01006516
Freshwater sediment metagenome lwFormate_C1
779
706
-
Pro
GGG
[ENA]
¡û
Identical group No.326275 (2 seq.)
>WENV180355114
OBNG01008142
[OBNG] sediment metagenome; sediment
582
506
-
Pro
GGG
[ENA]
¢þ
>ENV09000485
ABSO01004071
Freshwater sediment metagenome lwFormate_C1
5
81
+
Pro
GGG
[ENA]
¡û
Identical group No.393119 (1 seq.)
>ENV09000465
ABSO01000811
Freshwater sediment metagenome lwFormate_C1
839
763
-
Pro
GGG
[ENA]
¡û
Identical group No.393122 (1 seq.)
>ENV09000512
ABSO01010328
Freshwater sediment metagenome lwFormate_C1
238
162
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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