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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormate_C1
Anticodon = TAA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.114484 (27 seq.)
>W1710882953
LMVF01000053
Betaproteobacteria
Cupriavidus necator [LMVF]
11830
11916
+
Leu
TAA
[ENA]
¡û
>W1711167634
LVWN01000053
Betaproteobacteria
Cupriavidus necator [LVWN]
11830
11916
+
Leu
TAA
[ENA]
¡û
>W131156663
AQPZ01000059
Betaproteobacteria
Cupriavidus sp. GA3-3 GA3-3 [AQPZ]
98104
98018
-
Leu
TAA
[ENA]
¡û
>W131227472
AUFE01000010
Betaproteobacteria
Cupriavidus sp. amp6 [AUFE]
75486
75400
-
Leu
TAA
[ENA]
¡û
>C171067160
CP017757
Betaproteobacteria
Cupriavidus necator NH9 [CP017757, CP017758]
2970637
2970723
+
Leu
TAA
-
¡û
>C018451
AM260479
Betaproteobacteria
Cupriavidus necator H16 [AM260479, AM260480]
2749388
2749474
+
Leu
TAA
[Ensembl]
¡û
>C08008194
AM260479
Betaproteobacteria
Cupriavidus necator H16 [AM260479, AM260480]
2749388
2749474
+
Leu
TAA
[Ensembl]
¡û
>W141463949
JFJW01000055
Betaproteobacteria
Cupriavidus sp. SK-4 [JFJW]
107505
107591
+
Leu
TAA
[ENA]
¡û
>C191164565
CP039287
Betaproteobacteria
Cupriavidus necator H16 [CP039287, CP039288]
2748646
2748732
+
Leu
TAA
-
¡û
>W1910225292
FMSH01000038
Betaproteobacteria
Cupriavidus necator B9 [FMSH]
21019
20933
-
Leu
TAA
[ENA]
¡û
>C141006464
CP006667
Betaproteobacteria
Ralstonia pickettii DTP0602 [CP006667, CP006668, CP006669]
3106384
3106470
+
Leu
TAA
[Ensembl]
¡û
>W1910636894
LPWJ01000249
Betaproteobacteria
Cupriavidus sp. UYMSc13B [LPWJ]
4066
4152
+
Leu
TAA
[ENA]
¡û
>W1911532224
OGUS01000118
Betaproteobacteria
Cupriavidus oxalaticus [OGUS]
72930
73016
+
Leu
TAA
[ENA]
¡û
>W1810539961
QDHA01000034
Betaproteobacteria
Cupriavidus necator CR12 [QDHA]
96997
96911
-
Leu
TAA
[ENA]
¡û
>W1810596768
QGGT01000001
Betaproteobacteria
Cupriavidus plantarum SLV-132 [QGGT]
688257
688171
-
Leu
TAA
[ENA]
¡û
>W1810683941
QKWJ01000025
Betaproteobacteria
Cupriavidus lacunae S23 [QKWJ]
231
145
-
Leu
TAA
[ENA]
¡û
>W1810861199
QTTS01000001
Betaproteobacteria
Cupriavidus plantarum MA1-2za [QTTS]
1415940
1416026
+
Leu
TAA
[ENA]
¡û
>ENV09000469
ABSO01001916
Freshwater sediment metagenome lwFormate_C1
1559
1473
-
Leu
TAA
[ENA]
¡û
>ENV09000563
ABSO01021483
Freshwater sediment metagenome lwFormate_C1
427
513
+
Leu
TAA
[ENA]
¡û
>C11105753
CP002877
Betaproteobacteria
Cupriavidus necator N-1 [CP002877, CP002878]
2508799
2508885
+
Leu
TAA
[Ensembl]
¡û
>W1610053695
BBQI01000004
Betaproteobacteria
Cupriavidus sp. D384 [BBQI]
27160
27246
+
Leu
TAA
[ENA]
¡û
>W1610074304
BCWO01000014
Betaproteobacteria
Cupriavidus oxalaticus NBRC 13593 [BCWO]
8168
8254
+
Leu
TAA
[ENA]
¡û
>W1610077538
BCZN01000056
Betaproteobacteria
Cupriavidus necator NBRC 102504 [BCZN]
12449
12535
+
Leu
TAA
[ENA]
¡û
>W1610744879
LMVF01000053
Betaproteobacteria
Cupriavidus necator [LMVF]
11830
11916
+
Leu
TAA
[ENA]
¡û
>W1710050073
BBQI01000004
Betaproteobacteria
Cupriavidus sp. D384 [BBQI]
27160
27246
+
Leu
TAA
[ENA]
¡û
>W1710071422
BCWO01000014
Betaproteobacteria
Cupriavidus oxalaticus NBRC 13593 [BCWO]
8168
8254
+
Leu
TAA
[ENA]
¡û
>W1710075176
BCZN01000056
Betaproteobacteria
Cupriavidus necator NBRC 102504 [BCZN]
12449
12535
+
Leu
TAA
[ENA]
¡û
Identical group No.170919 (1 seq.)
>ENV09000489
ABSO01004806
Freshwater sediment metagenome lwFormate_C1
155
70
-
Leu
TAA
[ENA]
¡û
Identical group No.205472 (4 seq.)
>WENV170554243
CXWK01055605
[CXWK] wastewater metagenome; activated sludge
6734
6818
+
Leu
TAA
[ENA]
¢þ
>W1910744079
MHZX01000067
Betaproteobacteria
Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 [MHZX]
33974
34058
+
Leu
TAA
[ENA]
¡û
>C151000913
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
1603882
1603966
+
Leu
TAA
[Ensembl]
¡û
>ENV09000540
ABSO01015694
Freshwater sediment metagenome lwFormate_C1
137
53
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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