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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormate_C1
Anticodon = TCG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.309157 (13 seq.)
>W1711409316
MGOC01000119
Chloroflexota
Chloroflexi bacterium RBG_16_69_14 [MGOC]
21407
21483
+
Arg
TCG
[ENA]
¡û
>WENV180019309
FTBU01000726
[FTBU] metagenome; soil
1205
1129
-
Arg
TCG
[ENA]
¢þ
>WENV180019333
FTBU01001404
[FTBU] metagenome; soil
2715
2791
+
Arg
TCG
[ENA]
¢þ
>WENV180291627
OBIV01108988
[OBIV] soil metagenome; Clay
300
224
-
Arg
TCG
[ENA]
¢þ
>WENV180320460
OBKO01024699
[OBKO] soil metagenome; Alaskan Permafrost
132
56
-
Arg
TCG
[ENA]
¢þ
>WENV180327446
OBKT01141507
[OBKT] soil metagenome; soil
102
26
-
Arg
TCG
[ENA]
¢þ
>WENV180331509
OBLA01089961
[OBLA] soil metagenome; Alaskan Permafrost
67
143
+
Arg
TCG
[ENA]
¢þ
>WENV180355682
OBNI01020474
[OBNI] sediment metagenome; sediment
167
243
+
Arg
TCG
[ENA]
¢þ
>WENV180692415
OCZS010521002
[OCZS] soil metagenome; soil
117
193
+
Arg
TCG
[ENA]
¢þ
>WENV181184503
OEKI01000045
[OEKI] metagenome; 1998
4001
4077
+
Arg
TCG
[ENA]
¢þ
>WENV181192753
OEPS011008992
[OEPS] soil metagenome; soil
71
147
+
Arg
TCG
[ENA]
¢þ
>ENV09000560
ABSO01020830
Freshwater sediment metagenome lwFormate_C1
473
549
+
Arg
TCG
[ENA]
¡û
>ENV09000769
ABSP01032832
Freshwater sediment metagenome lwMethane_C1
664
588
-
Arg
TCG
[ENA]
¡û
Identical group No.393126 (1 seq.)
>ENV09000556
ABSO01019650
Freshwater sediment metagenome lwFormate_C1
639
713
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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