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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormate_C1
Anticodon = TGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460756 (29 seq.)
>C014473
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
378338
378410
+
Ala
TGC
[Ensembl]
¡û
>C014509
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
8964821
8964749
-
Ala
TGC
[Ensembl]
¡û
>w012149
AAMD01000099
Myxococcota
Stigmatella aurantiaca DW4/3-1 [AAMD]
30162
30237
+
Ala
TGC
[ENA]
¡û
>WENV180304753
OBJI01367949
[OBJI] soil metagenome; soil
92
20
-
Ala
TGC
[ENA]
¢þ
>WENV181233338
OFES01012959
[OFES] coral metagenome; NA
1621
1547
-
Ala
TGC
[ENA]
¢þ
>C191013110
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
372927
373000
+
Ala
TGC
-
¡û
>C191013145
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
9140817
9140744
-
Ala
TGC
-
¡û
>C191013175
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
374213
374286
+
Ala
TGC
-
¡û
>C191013210
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
9081148
9081075
-
Ala
TGC
-
¡û
>C191013240
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
374923
374996
+
Ala
TGC
-
¡û
>C191013276
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
8771291
8771218
-
Ala
TGC
-
¡û
>C191013281
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
5647934
5647861
-
Ala
TGC
-
¡û
>C191013306
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
371452
371525
+
Ala
TGC
-
¡û
>C191013341
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
9247471
9247398
-
Ala
TGC
-
¡û
>C191013371
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
373495
373568
+
Ala
TGC
-
¡û
>C191013406
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
9136000
9135927
-
Ala
TGC
-
¡û
>C191013436
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
373495
373568
+
Ala
TGC
-
¡û
>C191013471
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
9136069
9135996
-
Ala
TGC
-
¡û
>W141695219
JMCB01000038
Myxococcota
Hyalangium minutum [JMCB]
3646
3571
-
Ala
TGC
[ENA]
¡û
>W141695283
JMCC01000195
Myxococcota
Enhygromyxa salina [JMCC]
3646
3571
-
Ala
TGC
[ENA]
¡û
>C151091025
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
8838382
8838455
+
Ala
TGC
[Ensembl]
¡û
>C151091028
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
8232585
8232512
-
Ala
TGC
[Ensembl]
¡û
>ENV09000532
ABSO01014520
Freshwater sediment metagenome lwFormate_C1
506
431
-
Ala
TGC
[ENA]
¡û
>C11119103
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
577112
577185
+
Ala
TGC
[Ensembl]
¡û
>C11119132
CP002271
Myxococcota
Stigmatella aurantiaca DW4/3-1 [CP002271]
6868906
6868833
-
Ala
TGC
[Ensembl]
¡û
>W121102907
AKXT01000121
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
179
106
-
Ala
TGC
[ENA]
¡û
>W121103084
AKYI01000004
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
3853
3780
-
Ala
TGC
[ENA]
¡û
>W1710544144
FOAP01000045
Myxococcota
Stigmatella aurantiaca [FOAP]
2566
2639
+
Ala
TGC
[ENA]
¡û
>W1710554377
FOIJ01000037
Myxococcota
Stigmatella erecta [FOIJ]
3662
3589
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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