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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormate_C1
Anticodon = TGG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.260106 (1 seq.)
>ENV09000515
ABSO01011374
Freshwater sediment metagenome lwFormate_C1
71
146
+
Pro
TGG
[ENA]
¡û
Identical group No.317852 (6 seq.)
>WENV183667867
ORJL010688804
[ORJL] groundwater metagenome; groundwater
534
610
+
Pro
TGG
[ENA]
¢þ
>WENV183694591
ORMF012257011
[ORMF] groundwater metagenome; groundwater
354
278
-
Pro
TGG
[ENA]
¢þ
>WENV183749458
PPFU01172244
[PPFU] hypolithon metagenome; Antarctic Hypolithon
132
56
-
Pro
TGG
[ENA]
¢þ
>WENV170564288
CZKI01000021
[CZKI] soil metagenomic genome assembly CiPEHR-AK-2010-FBin.1, contig; soil
13350
13274
-
Pro
TGG
[ENA]
¢þ
>WENV170961443
MLJW01000043
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
54411
54487
+
Pro
TGG
[ENA]
¢þ
>ENV09000557
ABSO01019779
Freshwater sediment metagenome lwFormate_C1
477
553
+
Pro
TGG
[ENA]
¡û
Identical group No.735060 (1 seq.)
>ENV09000534
ABSO01014990
Freshwater sediment metagenome lwFormate_C1
77
3
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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