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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = ACG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245844 (2 seq.)
>WENV180291927
OBIV01231711
[OBIV] soil metagenome; Clay
62
137
+
Arg
ACG
[ENA]
¢þ
>ENV09001098
ABSQ01032174
Freshwater sediment metagenome lwMethenol_C1
612
689
+
Arg
ACG
[ENA]
¡û
Identical group No.258566 (3 seq.)
>WENV180320407
OBKO01004791
[OBKO] soil metagenome; Alaskan Permafrost
227
304
+
Arg
ACG
[ENA]
¢þ
>WENV183093365
OLLZ01000693
[OLLZ] soil metagenome; soil
1673
1596
-
Arg
ACG
[ENA]
¢þ
>ENV09000965
ABSQ01003380
Freshwater sediment metagenome lwMethenol_C1
244
167
-
Arg
ACG
[ENA]
¡û
Identical group No.262771 (1 seq.)
>ENV09001241
ABSQ01055151
Freshwater sediment metagenome lwMethenol_C1
592
515
-
Arg
ACG
[ENA]
¡û
Identical group No.270858 (67 seq.)
>W1711224659
LXUF01000011
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
128032
128108
+
Arg
ACG
[ENA]
¡û
>W1711387382
MEGO01000110
Betaproteobacteria
Thiobacillus sp. SCN 64-317 [MEGO]
5866
5790
-
Arg
ACG
[ENA]
¡û
>W1711413680
MGWR01000026
Betaproteobacteria
Gallionellales bacterium GWA2_60_142 [MGWR]
5958
6034
+
Arg
ACG
[ENA]
¡û
>W1711413681
MGWR01000026
Betaproteobacteria
Gallionellales bacterium GWA2_60_142 [MGWR]
6118
6194
+
Arg
ACG
[ENA]
¡û
>W1711413705
MGWS01000001
Betaproteobacteria
Gallionellales bacterium GWA2_60_18 [MGWS]
38500
38576
+
Arg
ACG
[ENA]
¡û
>W1711413782
MGWU01000287
Betaproteobacteria
Gallionellales bacterium RBG_16_56_9 [MGWU]
442
518
+
Arg
ACG
[ENA]
¡û
>W1711414484
MGZN01000347
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYA1_FULL_63_33 [MGZN]
19
95
+
Arg
ACG
[ENA]
¡û
>W1711423783
MIDJ01000010
Betaproteobacteria
Thiobacillus sp. GWE1_62_9 [MIDJ]
12703
12627
-
Arg
ACG
[ENA]
¡û
>W1711506517
MKWL01000023
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
122970
122894
-
Arg
ACG
[ENA]
¡û
>W1711506526
MKWM01000011
Betaproteobacteria
Thiobacillus sp. 63-78 [MKWM]
875
799
-
Arg
ACG
[ENA]
¡û
>W1711583377
MNXC01000243
Betaproteobacteria
Gallionellaceae bacterium CG1_02_56_997 [MNXC]
80
4
-
Arg
ACG
[ENA]
¡û
>W131160247
AQWL01000001
Betaproteobacteria
Thiobacillus denitrificans DSM 12475 [AQWL]
408062
407986
-
Arg
ACG
[ENA]
¡û
>W131164745
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
222001
221925
-
Arg
ACG
[ENA]
¡û
>W131168090
ARDU01000008
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
132177
132101
-
Arg
ACG
[ENA]
¡û
>C013409
CP000284
Betaproteobacteria
Methylobacillus flagellatus KT [CP000284]
590272
590196
-
Arg
ACG
[Ensembl]
¡û
>WENV180038430
FZPV01000035
[FZPV] metagenome; underground water
7344
7420
+
Arg
ACG
[ENA]
¢þ
>WENV180038496
FZPX01000230
[FZPX] metagenome; underground water
1341
1265
-
Arg
ACG
[ENA]
¢þ
>WENV180248141
OBEQ010087640
[OBEQ] groundwater metagenome; groundwater
290
214
-
Arg
ACG
[ENA]
¢þ
>WENV180310950
OBJT01065424
[OBJT] soil metagenome; soil
330
254
-
Arg
ACG
[ENA]
¢þ
>WENV181167527
OEIU01039424
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1359
1283
-
Arg
ACG
[ENA]
¢þ
>WENV181384198
OFRH01035099
[OFRH] wastewater metagenome; Exp Tend NO 100WW
112
36
-
Arg
ACG
[ENA]
¢þ
>W141229556
BAMT01000014
Betaproteobacteria
Methylobacillus glycogenes JCM 2850 [BAMT]
7657
7581
-
Arg
ACG
[ENA]
¡û
>WENV182560645
OJDU01013928
[OJDU] seawater metagenome; Sea water
1048
972
-
Arg
ACG
[ENA]
¢þ
>WENV183726813
PJTO01000196
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
2380
2456
+
Arg
ACG
[ENA]
¢þ
>WENV183729339
PJTQ01024224
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
103
179
+
Arg
ACG
[ENA]
¢þ
>WENV183736756
PJUD01000014
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
63437
63361
-
Arg
ACG
[ENA]
¢þ
>WENV183740726
PJUF01007593
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1950
2026
+
Arg
ACG
[ENA]
¢þ
>WENV170008663
AOMQ01015446
[AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream
151
227
+
Arg
ACG
[ENA]
¢þ
>WENV170558082
CXWL01049128
[CXWL] groundwater metagenome; biofilm material
13593
13517
-
Arg
ACG
[ENA]
¢þ
>WENV170558104
CXWL01050182
[CXWL] groundwater metagenome; biofilm material
68792
68868
+
Arg
ACG
[ENA]
¢þ
>WENV170559052
CXWL01108020
[CXWL] groundwater metagenome; biofilm material
77
1
-
Arg
ACG
[ENA]
¢þ
>WENV170559497
CXWL01126029
[CXWL] groundwater metagenome; biofilm material
1510
1434
-
Arg
ACG
[ENA]
¢þ
>WENV170571245
FLOH01000111
[FLOH] marine metagenome; water
210896
210820
-
Arg
ACG
[ENA]
¢þ
>WENV170577526
FSSH01000116
[FSSH] freshwater metagenome; drinking water
283468
283544
+
Arg
ACG
[ENA]
¢þ
>WENV170604357
FUWD010389380
[FUWD] metagenome; unknown
367
443
+
Arg
ACG
[ENA]
¢þ
>WENV170620686
FUWD013036855
[FUWD] metagenome; unknown
670
594
-
Arg
ACG
[ENA]
¢þ
>WENV170628830
FUWD013254110
[FUWD] metagenome; unknown
670
594
-
Arg
ACG
[ENA]
¢þ
>WENV170705483
LNAO01000930
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3143
3067
-
Arg
ACG
[ENA]
¢þ
>WENV170706630
LNAP01004883
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
12116
12040
-
Arg
ACG
[ENA]
¢þ
>WENV170707309
LNAP01016929
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
23
99
+
Arg
ACG
[ENA]
¢þ
>WENV170710295
LNFM01001474
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
63059
62983
-
Arg
ACG
[ENA]
¢þ
>WENV170712314
LNFM01012077
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8254
8178
-
Arg
ACG
[ENA]
¢þ
>WENV170713027
LNFM01022548
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1
77
+
Arg
ACG
[ENA]
¢þ
>WENV170919681
MDTF01011362
[MDTF] marine metagenome; seawater
1293
1217
-
Arg
ACG
[ENA]
¢þ
>WENV170920077
MDTF01014778
[MDTF] marine metagenome; seawater
13250
13326
+
Arg
ACG
[ENA]
¢þ
>WENV170961569
MLJW01000169
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
9004
8928
-
Arg
ACG
[ENA]
¢þ
>WENV170961729
MLJW01000717
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
5557
5481
-
Arg
ACG
[ENA]
¢þ
>WENV170961827
MLJW01002050
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
3210
3134
-
Arg
ACG
[ENA]
¢þ
>WENV170961915
MLJW01006627
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
121
197
+
Arg
ACG
[ENA]
¢þ
>W09101019
AADX02000007
Betaproteobacteria
Methylobacillus flagellatus KT [AADX]
134604
134528
-
Arg
ACG
[ENA]
¡û
>W09134936
ACVF01000001
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [ACVF]
174638
174714
+
Arg
ACG
[ENA]
¡û
>W141819380
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1419101
1419025
-
Arg
ACG
[ENA]
¡û
>W1910128293
BHGL01000006
Betaproteobacteria
Sulfuriferula thiophila mst6 [BHGL]
281314
281238
-
Arg
ACG
[ENA]
¡û
>C09107575
CP001674
Betaproteobacteria
Methylovorus glucosotrophus SIP3-4 [CP001674]
2318154
2318230
+
Arg
ACG
[Ensembl]
¡û
>W1910547767
FZOA01000014
Betaproteobacteria
Methylobacillus rhizosphaerae Ca-68 [FZOA]
16600
16524
-
Arg
ACG
[ENA]
¡û
>W1911624009
PQVH01000013
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
44962
45038
+
Arg
ACG
[ENA]
¡û
>C151104077
LN794158
Betaproteobacteria
Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158]
1385168
1385244
+
Arg
ACG
[Ensembl]
¡û
>ENV09000675
ABSP01013679
Freshwater sediment metagenome lwMethane_C1
747
823
+
Arg
ACG
[ENA]
¡û
>ENV09000930
ABSQ01000490
Freshwater sediment metagenome lwMethenol_C1
445
369
-
Arg
ACG
[ENA]
¡û
>ENV09001294
ABSR01000664
Freshwater sediment metagenome lwMethylamine_C1
704
628
-
Arg
ACG
[ENA]
¡û
>ENV09001332
ABSR01001872
Freshwater sediment metagenome lwMethylamine_C1
803
727
-
Arg
ACG
[ENA]
¡û
>ENV09001346
ABSR01002384
Freshwater sediment metagenome lwMethylamine_C1
2631
2707
+
Arg
ACG
[ENA]
¡û
>C10109358
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
2428613
2428689
+
Arg
ACG
[Ensembl]
¡û
>C10111866
CP001965
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [CP001965]
1520528
1520604
+
Arg
ACG
[Ensembl]
¡û
>W1511432032
JUGF01000002
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
1252104
1252028
-
Arg
ACG
[ENA]
¡û
>W1511433546
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
2292574
2292498
-
Arg
ACG
[ENA]
¡û
>W1611008623
LXUF01000011
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
128032
128108
+
Arg
ACG
[ENA]
¡û
Identical group No.326278 (13 seq.)
>WENV180039450
LLBY010071961
[LLBY] soil metagenome; soil from tomato rhizosphere
198
274
+
Arg
ACG
[ENA]
¢þ
>WENV180264384
OBEQ011565986
[OBEQ] groundwater metagenome; groundwater
3139
3215
+
Arg
ACG
[ENA]
¢þ
>WENV180268480
OBEQ011971542
[OBEQ] groundwater metagenome; groundwater
284
360
+
Arg
ACG
[ENA]
¢þ
>WENV180355156
OBNG01018844
[OBNG] sediment metagenome; sediment
111
187
+
Arg
ACG
[ENA]
¢þ
>WENV183666392
ORJL010547376
[ORJL] groundwater metagenome; groundwater
934
858
-
Arg
ACG
[ENA]
¢þ
>WENV183680376
ORMF010171132
[ORMF] groundwater metagenome; groundwater
2
78
+
Arg
ACG
[ENA]
¢þ
>WENV183683831
ORMF010627466
[ORMF] groundwater metagenome; groundwater
80
4
-
Arg
ACG
[ENA]
¢þ
>W1910697470
MEKT01000115
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT]
3257
3181
-
Arg
ACG
[ENA]
¡û
>W1910697507
MEKU01000038
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU]
20056
20132
+
Arg
ACG
[ENA]
¡û
>W1910697556
MEKV01000079
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV]
85072
85148
+
Arg
ACG
[ENA]
¡û
>W1910697808
MELC01000073
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC]
85093
85169
+
Arg
ACG
[ENA]
¡û
>W1910697830
MELD01000025
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD]
13452
13528
+
Arg
ACG
[ENA]
¡û
>ENV09001052
ABSQ01022092
Freshwater sediment metagenome lwMethenol_C1
226
150
-
Arg
ACG
[ENA]
¡û
Identical group No.408618 (1 seq.)
>ENV09001232
ABSQ01054247
Freshwater sediment metagenome lwMethenol_C1
353
429
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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