tRNA genes clustered and arranged according to each identical group

Freshwater sediment metagenome lwMethenol_C1

Anticodon = ACG

HIT: 6 Group(s).
Download Sequence Representative sequence of each cluster
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.245844 (2 seq.)
>WENV180291927 OBIV01231711 [OBIV] soil metagenome; Clay 62 137 + Arg ACG [ENA] ¢þ
>ENV09001098 ABSQ01032174 Freshwater sediment metagenome lwMethenol_C1 612 689 + Arg ACG [ENA] ¡û
Identical group No.258566 (3 seq.)
>WENV180320407 OBKO01004791 [OBKO] soil metagenome; Alaskan Permafrost 227 304 + Arg ACG [ENA] ¢þ
>WENV183093365 OLLZ01000693 [OLLZ] soil metagenome; soil 1673 1596 - Arg ACG [ENA] ¢þ
>ENV09000965 ABSQ01003380 Freshwater sediment metagenome lwMethenol_C1 244 167 - Arg ACG [ENA] ¡û
Identical group No.262771 (1 seq.)
>ENV09001241 ABSQ01055151 Freshwater sediment metagenome lwMethenol_C1 592 515 - Arg ACG [ENA] ¡û
Identical group No.270858 (67 seq.)
>W1711224659 LXUF01000011 Betaproteobacteria Methylovorus sp. MM2 MM1 [LXUF] 128032 128108 + Arg ACG [ENA] ¡û
>W1711387382 MEGO01000110 Betaproteobacteria Thiobacillus sp. SCN 64-317 [MEGO] 5866 5790 - Arg ACG [ENA] ¡û
>W1711413680 MGWR01000026 Betaproteobacteria Gallionellales bacterium GWA2_60_142 [MGWR] 5958 6034 + Arg ACG [ENA] ¡û
>W1711413681 MGWR01000026 Betaproteobacteria Gallionellales bacterium GWA2_60_142 [MGWR] 6118 6194 + Arg ACG [ENA] ¡û
>W1711413705 MGWS01000001 Betaproteobacteria Gallionellales bacterium GWA2_60_18 [MGWS] 38500 38576 + Arg ACG [ENA] ¡û
>W1711413782 MGWU01000287 Betaproteobacteria Gallionellales bacterium RBG_16_56_9 [MGWU] 442 518 + Arg ACG [ENA] ¡û
>W1711414484 MGZN01000347 Hydrogenophilia Hydrogenophilales bacterium RIFOXYA1_FULL_63_33 [MGZN] 19 95 + Arg ACG [ENA] ¡û
>W1711423783 MIDJ01000010 Betaproteobacteria Thiobacillus sp. GWE1_62_9 [MIDJ] 12703 12627 - Arg ACG [ENA] ¡û
>W1711506517 MKWL01000023 Betaproteobacteria Thiobacillus sp. 0-1251 [MKWL] 122970 122894 - Arg ACG [ENA] ¡û
>W1711506526 MKWM01000011 Betaproteobacteria Thiobacillus sp. 63-78 [MKWM] 875 799 - Arg ACG [ENA] ¡û
>W1711583377 MNXC01000243 Betaproteobacteria Gallionellaceae bacterium CG1_02_56_997 [MNXC] 80 4 - Arg ACG [ENA] ¡û
>W131160247 AQWL01000001 Betaproteobacteria Thiobacillus denitrificans DSM 12475 [AQWL] 408062 407986 - Arg ACG [ENA] ¡û
>W131164745 ARBA01000002 Betaproteobacteria Methylotenera mobilis 13 [ARBA] 222001 221925 - Arg ACG [ENA] ¡û
>W131168090 ARDU01000008 Betaproteobacteria Thiobacillus thioparus DSM 505 [ARDU] 132177 132101 - Arg ACG [ENA] ¡û
>C013409 CP000284 Betaproteobacteria Methylobacillus flagellatus KT [CP000284] 590272 590196 - Arg ACG [Ensembl] ¡û
>WENV180038430 FZPV01000035 [FZPV] metagenome; underground water 7344 7420 + Arg ACG [ENA] ¢þ
>WENV180038496 FZPX01000230 [FZPX] metagenome; underground water 1341 1265 - Arg ACG [ENA] ¢þ
>WENV180248141 OBEQ010087640 [OBEQ] groundwater metagenome; groundwater 290 214 - Arg ACG [ENA] ¢þ
>WENV180310950 OBJT01065424 [OBJT] soil metagenome; soil 330 254 - Arg ACG [ENA] ¢þ
>WENV181167527 OEIU01039424 [OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex 1359 1283 - Arg ACG [ENA] ¢þ
>WENV181384198 OFRH01035099 [OFRH] wastewater metagenome; Exp Tend NO 100WW 112 36 - Arg ACG [ENA] ¢þ
>W141229556 BAMT01000014 Betaproteobacteria Methylobacillus glycogenes JCM 2850 [BAMT] 7657 7581 - Arg ACG [ENA] ¡û
>WENV182560645 OJDU01013928 [OJDU] seawater metagenome; Sea water 1048 972 - Arg ACG [ENA] ¢þ
>WENV183726813 PJTO01000196 [PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment 2380 2456 + Arg ACG [ENA] ¢þ
>WENV183729339 PJTQ01024224 [PJTQ] soil metagenome; Soil (3) enriched on wood chips 103 179 + Arg ACG [ENA] ¢þ
>WENV183736756 PJUD01000014 [PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment 63437 63361 - Arg ACG [ENA] ¢þ
>WENV183740726 PJUF01007593 [PJUF] feces metagenome; Chicken feces (3) enriched on wood chips 1950 2026 + Arg ACG [ENA] ¢þ
>WENV170008663 AOMQ01015446 [AOMQ] mine drainage metagenome; low temperature acidic, metal-polluted mine stream 151 227 + Arg ACG [ENA] ¢þ
>WENV170558082 CXWL01049128 [CXWL] groundwater metagenome; biofilm material 13593 13517 - Arg ACG [ENA] ¢þ
>WENV170558104 CXWL01050182 [CXWL] groundwater metagenome; biofilm material 68792 68868 + Arg ACG [ENA] ¢þ
>WENV170559052 CXWL01108020 [CXWL] groundwater metagenome; biofilm material 77 1 - Arg ACG [ENA] ¢þ
>WENV170559497 CXWL01126029 [CXWL] groundwater metagenome; biofilm material 1510 1434 - Arg ACG [ENA] ¢þ
>WENV170571245 FLOH01000111 [FLOH] marine metagenome; water 210896 210820 - Arg ACG [ENA] ¢þ
>WENV170577526 FSSH01000116 [FSSH] freshwater metagenome; drinking water 283468 283544 + Arg ACG [ENA] ¢þ
>WENV170604357 FUWD010389380 [FUWD] metagenome; unknown 367 443 + Arg ACG [ENA] ¢þ
>WENV170620686 FUWD013036855 [FUWD] metagenome; unknown 670 594 - Arg ACG [ENA] ¢þ
>WENV170628830 FUWD013254110 [FUWD] metagenome; unknown 670 594 - Arg ACG [ENA] ¢þ
>WENV170705483 LNAO01000930 [LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 3143 3067 - Arg ACG [ENA] ¢þ
>WENV170706630 LNAP01004883 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 12116 12040 - Arg ACG [ENA] ¢þ
>WENV170707309 LNAP01016929 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 23 99 + Arg ACG [ENA] ¢þ
>WENV170710295 LNFM01001474 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 63059 62983 - Arg ACG [ENA] ¢þ
>WENV170712314 LNFM01012077 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 8254 8178 - Arg ACG [ENA] ¢þ
>WENV170713027 LNFM01022548 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 1 77 + Arg ACG [ENA] ¢þ
>WENV170919681 MDTF01011362 [MDTF] marine metagenome; seawater 1293 1217 - Arg ACG [ENA] ¢þ
>WENV170920077 MDTF01014778 [MDTF] marine metagenome; seawater 13250 13326 + Arg ACG [ENA] ¢þ
>WENV170961569 MLJW01000169 [MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for 9004 8928 - Arg ACG [ENA] ¢þ
>WENV170961729 MLJW01000717 [MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for 5557 5481 - Arg ACG [ENA] ¢þ
>WENV170961827 MLJW01002050 [MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for 3210 3134 - Arg ACG [ENA] ¢þ
>WENV170961915 MLJW01006627 [MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for 121 197 + Arg ACG [ENA] ¢þ
>W09101019 AADX02000007 Betaproteobacteria Methylobacillus flagellatus KT [AADX] 134604 134528 - Arg ACG [ENA] ¡û
>W09134936 ACVF01000001 Betaproteobacteria Sideroxydans lithotrophicus ES-1 [ACVF] 174638 174714 + Arg ACG [ENA] ¡û
>W141819380 JQMG01000001 Betaproteobacteria Methylotenera sp. L2L1 [JQMG] 1419101 1419025 - Arg ACG [ENA] ¡û
>W1910128293 BHGL01000006 Betaproteobacteria Sulfuriferula thiophila mst6 [BHGL] 281314 281238 - Arg ACG [ENA] ¡û
>C09107575 CP001674 Betaproteobacteria Methylovorus glucosotrophus SIP3-4 [CP001674] 2318154 2318230 + Arg ACG [Ensembl] ¡û
>W1910547767 FZOA01000014 Betaproteobacteria Methylobacillus rhizosphaerae Ca-68 [FZOA] 16600 16524 - Arg ACG [ENA] ¡û
>W1911624009 PQVH01000013 Betaproteobacteria Methylotenera oryzisoli La3113 [PQVH] 44962 45038 + Arg ACG [ENA] ¡û
>C151104077 LN794158 Betaproteobacteria Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158] 1385168 1385244 + Arg ACG [Ensembl] ¡û
>ENV09000675 ABSP01013679 Freshwater sediment metagenome lwMethane_C1 747 823 + Arg ACG [ENA] ¡û
>ENV09000930 ABSQ01000490 Freshwater sediment metagenome lwMethenol_C1 445 369 - Arg ACG [ENA] ¡û
>ENV09001294 ABSR01000664 Freshwater sediment metagenome lwMethylamine_C1 704 628 - Arg ACG [ENA] ¡û
>ENV09001332 ABSR01001872 Freshwater sediment metagenome lwMethylamine_C1 803 727 - Arg ACG [ENA] ¡û
>ENV09001346 ABSR01002384 Freshwater sediment metagenome lwMethylamine_C1 2631 2707 + Arg ACG [ENA] ¡û
>C10109358 CP002056 Betaproteobacteria Methylotenera versatilis 301 [CP002056] 2428613 2428689 + Arg ACG [Ensembl] ¡û
>C10111866 CP001965 Betaproteobacteria Sideroxydans lithotrophicus ES-1 [CP001965] 1520528 1520604 + Arg ACG [Ensembl] ¡û
>W1511432032 JUGF01000002 Betaproteobacteria Methylotenera versatilis 7 [JUGF] 1252104 1252028 - Arg ACG [ENA] ¡û
>W1511433546 JUHH01000001 Betaproteobacteria Methylotenera sp. G11 [JUHH] 2292574 2292498 - Arg ACG [ENA] ¡û
>W1611008623 LXUF01000011 Betaproteobacteria Methylovorus sp. MM2 MM1 [LXUF] 128032 128108 + Arg ACG [ENA] ¡û
Identical group No.326278 (13 seq.)
>WENV180039450 LLBY010071961 [LLBY] soil metagenome; soil from tomato rhizosphere 198 274 + Arg ACG [ENA] ¢þ
>WENV180264384 OBEQ011565986 [OBEQ] groundwater metagenome; groundwater 3139 3215 + Arg ACG [ENA] ¢þ
>WENV180268480 OBEQ011971542 [OBEQ] groundwater metagenome; groundwater 284 360 + Arg ACG [ENA] ¢þ
>WENV180355156 OBNG01018844 [OBNG] sediment metagenome; sediment 111 187 + Arg ACG [ENA] ¢þ
>WENV183666392 ORJL010547376 [ORJL] groundwater metagenome; groundwater 934 858 - Arg ACG [ENA] ¢þ
>WENV183680376 ORMF010171132 [ORMF] groundwater metagenome; groundwater 2 78 + Arg ACG [ENA] ¢þ
>WENV183683831 ORMF010627466 [ORMF] groundwater metagenome; groundwater 80 4 - Arg ACG [ENA] ¢þ
>W1910697470 MEKT01000115 Acidobacteriota Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 [MEKT] 3257 3181 - Arg ACG [ENA] ¡û
>W1910697507 MEKU01000038 Acidobacteriota Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 [MEKU] 20056 20132 + Arg ACG [ENA] ¡û
>W1910697556 MEKV01000079 Acidobacteriota Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_36 [MEKV] 85072 85148 + Arg ACG [ENA] ¡û
>W1910697808 MELC01000073 Acidobacteriota Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 [MELC] 85093 85169 + Arg ACG [ENA] ¡û
>W1910697830 MELD01000025 Acidobacteriota Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14 [MELD] 13452 13528 + Arg ACG [ENA] ¡û
>ENV09001052 ABSQ01022092 Freshwater sediment metagenome lwMethenol_C1 226 150 - Arg ACG [ENA] ¡û
Identical group No.408618 (1 seq.)
>ENV09001232 ABSQ01054247 Freshwater sediment metagenome lwMethenol_C1 353 429 + Arg ACG [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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