This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = CAA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105991 (1 seq.)
>ENV09001249
ABSQ01055961
Freshwater sediment metagenome lwMethenol_C1
212
125
-
Leu
CAA
[ENA]
¡û
Identical group No.134560 (10 seq.)
>W131163521
AQZU01000003
Gammaproteobacteria
Methylovulum miyakonense HT12 [AQZU]
791425
791339
-
Leu
CAA
[ENA]
¡û
>WENV180261422
OBEQ011292186
[OBEQ] groundwater metagenome; groundwater
3481
3395
-
Leu
CAA
[ENA]
¢þ
>W141187108
AYLO01000094
Gammaproteobacteria
Methyloglobulus morosus KoM1 [AYLO]
7608
7522
-
Leu
CAA
[ENA]
¡û
>WENV183668586
ORJL010754891
[ORJL] groundwater metagenome; groundwater
614
528
-
Leu
CAA
[ENA]
¢þ
>WENV183675395
ORJL011504231
[ORJL] groundwater metagenome; groundwater
7632
7718
+
Leu
CAA
[ENA]
¢þ
>WENV183692078
ORMF011863102
[ORMF] groundwater metagenome; groundwater
1298
1212
-
Leu
CAA
[ENA]
¢þ
>C181059024
CP022129
Gammaproteobacteria
Methylovulum psychrotolerans HV10_M2 [CP022129]
2684686
2684772
+
Leu
CAA
-
¡û
>W1810090409
PGFZ01000008
Gammaproteobacteria
Methylovulum psychrotolerans Sph1 [PGFZ]
19112
19026
-
Leu
CAA
[ENA]
¡û
>W1810296023
PTIY01000010
Gammaproteobacteria
Methylobacter tundripaludum OWC-G53F [PTIY]
190685
190771
+
Leu
CAA
[ENA]
¡û
>ENV09000987
ABSQ01010350
Freshwater sediment metagenome lwMethenol_C1
16
102
+
Leu
CAA
[ENA]
¡û
Identical group No.143240 (1 seq.)
>ENV09001114
ABSQ01034558
Freshwater sediment metagenome lwMethenol_C1
627
541
-
Leu
CAA
[ENA]
¡û
Identical group No.143242 (1 seq.)
>ENV09001140
ABSQ01037382
Freshwater sediment metagenome lwMethenol_C1
218
132
-
Leu
CAA
[ENA]
¡û
Identical group No.173206 (1 seq.)
>ENV09001183
ABSQ01044401
Freshwater sediment metagenome lwMethenol_C1
567
484
-
Leu
CAA
[ENA]
¡û
Identical group No.195911 (9 seq.)
>WENV180024838
FTIJ01114897
[FTIJ] metagenome; soil
61
145
+
Leu
CAA
[ENA]
¢þ
>WENV180026433
FTIT01196511
[FTIT] metagenome; soil
476
560
+
Leu
CAA
[ENA]
¢þ
>WENV170559927
CXWL01177520
[CXWL] groundwater metagenome; biofilm material
1410
1494
+
Leu
CAA
[ENA]
¢þ
>W1810062409
PDOC01000002
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
292726
292810
+
Leu
CAA
[ENA]
¡û
>W1810068489
PDZM01000004
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
394460
394544
+
Leu
CAA
[ENA]
¡û
>W1810068768
PDZP01000026
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
59290
59374
+
Leu
CAA
[ENA]
¡û
>W1810069723
PEBS01000001
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
233836
233920
+
Leu
CAA
[ENA]
¡û
>ENV09001265
ABSQ01058060
Freshwater sediment metagenome lwMethenol_C1
789
705
-
Leu
CAA
[ENA]
¡û
>W1710568775
FOTW01000004
Betaproteobacteria
Rugamonas rubra [FOTW]
97664
97580
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK