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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = CAC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.408614 (1 seq.)
>ENV09001200
ABSQ01047948
Freshwater sediment metagenome lwMethenol_C1
412
488
+
Val
CAC
[ENA]
¡û
Identical group No.408621 (1 seq.)
>ENV09001260
ABSQ01057436
Freshwater sediment metagenome lwMethenol_C1
133
57
-
Val
CAC
[ENA]
¡û
Identical group No.604475 (1 seq.)
>ENV09001086
ABSQ01030072
Freshwater sediment metagenome lwMethenol_C1
102
27
-
Val
CAC
[ENA]
¡û
Identical group No.668172 (7 seq.)
>WENV181370383
OFQS01007270
[OFQS] freshwater metagenome; Freshwater Lake
480
406
-
Val
CAC
[ENA]
¢þ
>WENV183676976
ORJL011694566
[ORJL] groundwater metagenome; groundwater
1336
1262
-
Val
CAC
[ENA]
¢þ
>WENV170012155
APMI01127320
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
474
400
-
Val
CAC
[ENA]
¢þ
>WENV170961658
MLJW01000379
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
5291
5365
+
Val
CAC
[ENA]
¢þ
>W1910699053
MEQV01000041
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17 [MEQV]
4040
3966
-
Val
CAC
[ENA]
¡û
>W1911740717
QUSW01000001
Betaproteobacteria
Albitalea terrae S-16 [QUSW]
417858
417784
-
Val
CAC
[ENA]
¡û
>ENV09001121
ABSQ01035513
Freshwater sediment metagenome lwMethenol_C1
588
659
+
Val
CAC
[ENA]
¡û
Identical group No.745836 (1 seq.)
>ENV09001050
ABSQ01021960
Freshwater sediment metagenome lwMethenol_C1
157
83
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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